Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1319 ATGGCGAATACTACGCCGGCCGCCGCAGCAGCAGCTTCTCTTTACGTCGGCGATCTCCACCCTGACATCGGCGAGGGTAAACTGTCTGAAATGTTCTCTGAGTTCAAGAGCCTTACTTCCGTTCGAGTTTGTAGGGACTCCGCTACAGGCCGGTCTCTCTGTTACGGCTACGTCAACTTCGCCTCCCCTCAAGATGCAATTCGTGCTATTGAGGTGAAGAATCATTCTATAATGAATGGAAAACCGATAAGGATCATGTGGTCAAATCGTGATCCTGATGCAACTAAAAGTGGTACAGGGAATGTGTTCGTTAAGAACCTACCTGAATCAATAGATAATGTGGGACTACAAGATTTGTTTCAAAAGTTCGGTATTATTTTGTCCTGCAAAGTTGCCATGAATGACGATGGAAAAAGCAAAGGATATGGCTATGTTCAATTTCAGTCCGAGGAATCTGCAAATTCTGCCATCGAGAAGATGAATGGTTCTACTGTTAAAGATAAGCAAATTTATGCTGGAAAGTTTGTTAAAAAAAGTGACCGCATTTTGCCAAATTCTAATGCGAAATATACAAATTTATATTTCAAGAATTTGGACCCCAAAATTACTGAAGAGCTTCTACAGGAAAAGTTCTCGTCTTTTGGAAAAATTTCTAGTTTAGTTATTGTGAAGGATGAGGATGGGATCTCGAAGGGTTTTGGCTTCGTGAACTATGACAACCCAGATGATGCTAAACTGGCATTGGAAGGAATGAATGGATCACAACTCGCAGGCTCAAAGATTCTATACGTAGCCAGGGCACAAAAGAAGGCCGAGCGTGAGCTTATTTTGCACCATCATTTTGAGAAGAAACGCAAGGAACAAATCTCAAAATACAAGGTATCAAATGTGTATGTGAAGAACATTGATGAAGACGTAAGTGATGAAGAACTATGGGATCTTTTTCATGCATGTGGCTCAATAACATCTGCAGTAGTTATGCGAGATGGCAGAGGTAAAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCTACCCCTGAAGAGGCTAATAAAGCTGTGAACACCTTTCATGGATATATGTTTCATTGCAAACCATTATATGTTGCTATTGCTCAAAAGAAGCAGGATAGGCAAGCACAATTGCATATTCAGCATGCACAGAGAATAGAAGGACTATATGGACCTTCAATAGCTGTTATTCCTGGCGGATATCGTCCTTATTATTATGCAGCTCCTGGGGCCGTTTCACAGGTTCCTTCTCTTTCTGGGCTAGTGTATCAACAGTGGGGGTTGACACAAGGATGGAAGACTAACAGCTTTGCACCTCCTCCTCCCAGACCATTTCAACAACCACTATTTCCTATGGTTTCCAATTCTGCAAGGCAAAATAAGCAAAACTGGGGCAGGATGAATGGACAAACAATTTCACAGGGAAATCTCCACTCTAGTACTCGTATGGTACAATCGCATCAGCCAAATCAATCATCAAACTCTTCAAGAGAATCAAGTACACAACAGCGAGCTGGGCCAACAAAGTATGCGCCCAGTGGCAGTGTGCGGCAGCCCAAAATGGAGAAAGTATCTGGAGGCTCCTCTGTTGGTAGCAATTTGGTAGGATCTTTGGGATCAGAAATGCTGCATAGTATGCTTGCTGCTGCTACTCCAGAACAGCAGAAACAGATACTGGGCGAGCAACTTTACCCTCTAGTTCATAAACTCAAGCCTGTACTATCATCGAAAATTACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGCTTCTCCTGGAGTCTCCGGATTCTCTTATTGCCAAGGTGGAAGAAGCCGTGCAGGTGCTTGAAAACTCTAATGCCGCTGTTTCTGGCCAGGATGTACTTCATCCAAATTGCCTTTCAACCGAAGTTGCCGTTAACTGA 1917 0.4319 MANTTPAAAAAASLYVGDLHPDIGEGKLSEMFSEFKSLTSVRVCRDSATGRSLCYGYVNFASPQDAIRAIEVKNHSIMNGKPIRIMWSNRDPDATKSGTGNVFVKNLPESIDNVGLQDLFQKFGIILSCKVAMNDDGKSKGYGYVQFQSEESANSAIEKMNGSTVKDKQIYAGKFVKKSDRILPNSNAKYTNLYFKNLDPKITEELLQEKFSSFGKISSLVIVKDEDGISKGFGFVNYDNPDDAKLALEGMNGSQLAGSKILYVARAQKKAERELILHHHFEKKRKEQISKYKVSNVYVKNIDEDVSDEELWDLFHACGSITSAVVMRDGRGKSKGFGFVCFSTPEEANKAVNTFHGYMFHCKPLYVAIAQKKQDRQAQLHIQHAQRIEGLYGPSIAVIPGGYRPYYYAAPGAVSQVPSLSGLVYQQWGLTQGWKTNSFAPPPPRPFQQPLFPMVSNSARQNKQNWGRMNGQTISQGNLHSSTRMVQSHQPNQSSNSSRESSTQQRAGPTKYAPSGSVRQPKMEKVSGGSSVGSNLVGSLGSEMLHSMLAAATPEQQKQILGEQLYPLVHKLKPVLSSKITGMLLEMDNGELLLLLESPDSLIAKVEEAVQVLENSNAAVSGQDVLHPNCLSTEVAVN 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1319 638 SUPERFAMILY RNA-binding domain, RBD 182 273 IPR035979 GO:0003676
Mibi02g1319 638 SMART rrm2_1 101 173 IPR003954 GO:0003676
Mibi02g1319 638 SMART rrm2_1 296 368 IPR003954 GO:0003676
Mibi02g1319 638 SMART rrm2_1 192 264 IPR003954 GO:0003676
Mibi02g1319 638 CDD RRM1_I_PABPs 13 92 - -
Mibi02g1319 638 Gene3D - 277 384 IPR012677 -
Mibi02g1319 638 Gene3D - 181 276 IPR012677 -
Mibi02g1319 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Mibi02g1319 638 FunFam Polyadenylate-binding protein 4 96 - -
Mibi02g1319 638 Gene3D - 101 180 IPR012677 -
Mibi02g1319 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 364 IPR000504 GO:0003723
Mibi02g1319 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Mibi02g1319 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Mibi02g1319 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Mibi02g1319 638 PANTHER RNA BINDING PROTEIN 286 503 - -
Mibi02g1319 638 SUPERFAMILY RNA-binding domain, RBD 290 384 IPR035979 GO:0003676
Mibi02g1319 638 SMART rrm1_1 13 86 IPR000504 GO:0003723
Mibi02g1319 638 SMART rrm1_1 296 368 IPR000504 GO:0003723
Mibi02g1319 638 SMART rrm1_1 192 265 IPR000504 GO:0003723
Mibi02g1319 638 SMART rrm1_1 101 173 IPR000504 GO:0003723
Mibi02g1319 638 FunFam Polyadenylate-binding protein 182 277 - -
Mibi02g1319 638 Gene3D - 3 100 IPR012677 -
Mibi02g1319 638 Gene3D - 539 629 - -
Mibi02g1319 638 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Mibi02g1319 638 MobiDBLite consensus disorder prediction 481 511 - -
Mibi02g1319 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Mibi02g1319 638 MobiDBLite consensus disorder prediction 481 531 - -
Mibi02g1319 638 SUPERFAMILY PABC (PABP) domain 504 623 IPR036053 GO:0003723
Mibi02g1319 638 SMART poly_2 553 616 IPR002004 GO:0003723
Mibi02g1319 638 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 541 618 IPR002004 GO:0003723
Mibi02g1319 638 CDD RRM2_I_PABPs 98 174 IPR045305 -
Mibi02g1319 638 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 613 IPR006515 GO:0003723
Mibi02g1319 638 FunFam Polyadenylate-binding protein 539 624 - -
Mibi02g1319 638 FunFam Polyadenylate-binding protein 97 181 - -
Mibi02g1319 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Mibi02g1319 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 372 IPR000504 GO:0003723
Mibi02g1319 638 Pfam Poly-adenylate binding protein, unique domain 548 613 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1319 Mibi-ChrMibi02 13032358 13036316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1319 12 636 Eukaryotic Initiation Factors Gene Family AT2G36660 50.238 0.0 575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1319 02 13032358 13036316 Mibi06g2165 06 42127168 42131766 CCT
Mibi02g1319 02 13032358 13036316 Mibi02g1319 02 13032358 13036316 ECH