Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1309 ATGGATTGGGATTGGAGCATAAGACCTTCTGTTCCTCAAGCTGAGTCTTCCTTTGGCTTCCTCAATAACTTTAACTACTCTCCATATCCAGGAATGGGAGTGAAACATCCAGCAATGACAGAGGCTAGTGAGAGACAAGGGTTGACTCCGGGAAAGGACAAAGTCAACACCGGAAAGCAAGAACAGCAGCAGAAGAAGAAGCGACTAACAAGCAGGCAGGCAGAGTCACTGGAGAAGAGTTTTGAGAAGGAGAAAAAACTGGACGCAGAGAGGAAGATGAAGCTGTCAAAGGAGTTAGGGTTGCAGCCTCGCCAAGTTGCGGTTTGGTTCCAAAACAGGAGGGCAAGGTGGAAGACAAAGCAGCTTGAGCACTTGTATGATGCTCTCAAACAGGATTTTGATGCCATCTACAAGGAAAAACAGAAGCTTCAAGAAGAGGTTACGACGTTAAAAGCCATGCTGAGAAAGCAAGAATCTAGGACACAGGCATCTGCAGATTATCTTCAAATCTGGGGAAGAAAGTAG 525 0.461 MDWDWSIRPSVPQAESSFGFLNNFNYSPYPGMGVKHPAMTEASERQGLTPGKDKVNTGKQEQQQKKKRLTSRQAESLEKSFEKEKKLDAERKMKLSKELGLQPRQVAVWFQNRRARWKTKQLEHLYDALKQDFDAIYKEKQKLQEEVTTLKAMLRKQESRTQASADYLQIWGRK 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1309 174 Coils Coil 126 160 - -
Mibi02g1309 174 MobiDBLite consensus disorder prediction 58 83 - -
Mibi02g1309 174 Gene3D - 23 121 - -
Mibi02g1309 174 SUPERFAMILY Homeodomain-like 58 124 IPR009057 -
Mibi02g1309 174 MobiDBLite consensus disorder prediction 31 83 - -
Mibi02g1309 174 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Mibi02g1309 174 FunFam homeobox-leucine zipper protein ATHB-6-like 68 114 - -
Mibi02g1309 174 Coils Coil 59 79 - -
Mibi02g1309 174 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Mibi02g1309 174 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Mibi02g1309 174 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Mibi02g1309 174 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 161 IPR045224 GO:0003700
Mibi02g1309 174 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Mibi02g1309 174 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Mibi02g1309 174 SMART HOX_1 63 124 IPR001356 GO:0003677
Mibi02g1309 174 CDD homeodomain 68 121 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1309 Mibi-ChrMibi02 12946090 12946918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1309 9 152 Homeobox Transcription Factor Family AT5G03790 49.324 4.46e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi02g1309 Homeodomain 2.9e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2156 06 42029257 42030456 Mibi02g1309 02 12946090 12946918 CCT
Mibi02g1309 02 12946090 12946918 Mibi02g1309 02 12946090 12946918 ECH