Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1279 ATGCATTCCAACAATACTAACTCTAGTTCTACCTCCTCTGCCACCGGTGGCGGTGCGGTGGCAACAGGGCGCCACCCAGTGTACCGGGGTGTGAGGCGCCGGAGCAGTGGGAAATGGGTTTGTGAGATTCGTGAGCCCAGGAAGCCCAATAGGATATGGTTAGGCACATTCCCTACCCCTGAAATGGCTGCCATTGCCTATGACGTGGCTGCCCTTGCCCTTAAGGGCAACAACGCCGACCTTAACTTCCCCGATTCGGCTTCCTCCCTGCCCGTTCCGGCGTCCCGCTCTGCCCGTGATATTCAGATCGCCGCCGCCAGTGCAGCCGCCGCCGCCGGGGCAGCTAGGGATGCCTTATCCGGGCACAATAACGAACAAGGCAATAATAGTAAAAGTAATGTTAATGCCAATAGTGTTGGTGTTTCCGAGGGACAACAAACTGGTGGGGCTGAGTTTATGGACGAGGATTTGATATTTGATTTACCTAATGTTCTTGTCAACATGGCTGAAGGAATGATGGTCGCCCCTCCTCCTGTGGATTTTAGTGGCGACAACAACTGTGCTGATGATGCTGCCGGAGGAAATGTTGGCGGCGATGATGATTATGAGAACCTTTGGAAATTTCCGTAA 630 0.5349 MHSNNTNSSSTSSATGGGAVATGRHPVYRGVRRRSSGKWVCEIREPRKPNRIWLGTFPTPEMAAIAYDVAALALKGNNADLNFPDSASSLPVPASRSARDIQIAAASAAAAAGAARDALSGHNNEQGNNSKSNVNANSVGVSEGQQTGGAEFMDEDLIFDLPNVLVNMAEGMMVAPPPVDFSGDNNCADDAAGGNVGGDDDYENLWKFP 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1279 209 MobiDBLite consensus disorder prediction 121 145 - -
Mibi02g1279 209 MobiDBLite consensus disorder prediction 1 28 - -
Mibi02g1279 209 MobiDBLite consensus disorder prediction 1 18 - -
Mibi02g1279 209 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Mibi02g1279 209 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Mibi02g1279 209 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Mibi02g1279 209 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 15 207 IPR045277 GO:0003700
Mibi02g1279 209 FunFam Ethylene-responsive transcription factor 2 26 85 - -
Mibi02g1279 209 MobiDBLite consensus disorder prediction 117 146 - -
Mibi02g1279 209 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
Mibi02g1279 209 CDD AP2 28 86 IPR001471 GO:0003700|GO:0006355
Mibi02g1279 209 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Mibi02g1279 209 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Mibi02g1279 209 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1279 Mibi-ChrMibi02 12663554 12664183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1279 23 209 AP2-EREBP Transcription Factor Family AT2G36450 61.905 1.27e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi02g1279 AP2 1.1e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1279 02 12663554 12664183 Mibi06g2141 06 41847775 41848362 CCT
Mibi02g1279 02 12663554 12664183 Mibi02g1279 02 12663554 12664183 ECH