Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1180 ATGAACCACTTAGCTCTCACCATGGACGAGCATCTCCTGAAGCTTGTTTCAGCACTCATCATTCTCTCGCTTGCTGTAGTGGCTTTTTGTGACACTGATCCGAATGACGCTAAGATTCTCAGCCAATTCAGGAAAGGTTTGGACAATCCGGAGCTTCTTCCGTGGCCTGAAGATGGTGGAGACCCTTGTGGGAGCCCTACTTGGAAGTACATCTTCTGTAAGGGGAATAGAGTTTCCCAGATTCAGGCTAAGAACTTGAACTTGAGTGGTCCTCTGCCTCAGAATTTCAACCAGCTCTCCATGTTAGAGAACATTGGCCTTCAGAACAACAAACTTAACGGGCCGTTACCGTCTTTCAGTGGTTTGTCAAATTTGAGATATGCTTATTTGGACTATAATGAATTTGACTCCATTCCTGCTGATTTCTTTGACGGGCTTGTGAGTTTGGAAGCCCTGGCATTGGATTATAATAATTTTAATGCTTCTACTGGATGGCAATTTCCCTCTGGGTTGCAAGATTCATCACAGCTAACCAATCTTACTTGTATGAACTGCAACTTAGCTGGTCCATTGCCGATTTTTCTGGGCAATTTGTCTTCTCTGTCTGTTTTGAGGCTTTCACGGAATAATTTGACCGGTGAAATTCCGGCGACTTTGAGTGGCTCGATTTTGCAGGCTCTGTGGTTGAATGATCAGCTGAATGGTGGTCTCACTGGTACTATTGATGTGGTGGCAACCATGACTTCGCTTACGAGTCTGTGGCTTCATGGGAATCACTTCACGGGGAGGATTCCTAAGAACATTGGGGATCTAACTTCTCTCAAGGATTTCAATCTCAATTTTAACCAGCTCGTTGGAGAAATCCCAGATGCTTTGGGTAAAATGAAACTCGACAGTCTTAATTTGAACAACAACCACCTTATGGGACCGATCCCAACTTTCGCAGCAGGCAATTTTTCATACGATTATAATTATTTCTGTCAATCCAAACCCGGGGTTCCTTGTTCCTTTGAAGTCACGGCACTTCTGGACTTTCTGGATGGGGTGAATTATCCTCTAAATCTAGTTGAATCTTGGTCTGGTAATGACCCATGTAAAGGTCCATGGCTGGGAATAACTTGCGATGCCTCTGGAAAGGTGTCAATGGTTAATTTGCCCAAATTTAAACTCAATGGAACTTTAAGCCCCTCCCTTGCAAACTTAGTTTCTCTTGTTGAAATCAGATTAGAGGGCAACAATCTGAGTGGTCAAATACCTAGTAATTGGACTAGTTTGAGTTCTCTGACACTGTTGGATCTCAGTGACAATAACATATCCCCTCCACTGCCTCATTTTAGCAGCAAGTTGAAACTTGTCTATGCTGGAAACTCTTTATTGAATGGAAACCCAGAGGCCCCTTCATCTGGGAACAGCTCGTCTTCTGGGAATTCTATTCCTTCAACTGATAGTCCATCCCCATCAACACACACAAAATCCAATCCCAACACTAGTCCTAGATCACAAAATTCCAGCAGGAAAATTTTGGTTGCCATTGTAGCCCCTGTTGCAGGAGTTGTGGCGGCGGCTTTTCTGCTCATTCCCCTGATATATTGTTACAAGAGGAGAAAAGATAGGCCACTGGCTCCACTAGTAATCCACCCTAGAGATCCATCTGATCCAGACAATATGGTGAAGATTGCTGTGGCTAACAATACGTATGGAAGCATGTCCACATTAACAGGGAGTGGATCAGGAAGTAGAAACGGCAGTGGAACTGGGGAGTCTCATGTCATTGAAGCTGGAAATCTTGTGATATCAGTTCAAGTTCTTCGTAATGTGACTAAGAACTTTGCCCCCGAGAATGAGCTTGGTCGAGGTGGATTTGGTGTTGTATATAAGGGAGAATTGGATGATGGGACTAACATAGCAGTGAAAAGAATGGAAGCTGGTATAATCAGTAACAAAGCGTTGGATGAATTTCAGTCTGAAATTGCAGTGTTATCAAAAGTCAGACACCGTCATCTAGTGTCTCTCCTGGGTTACTCTGTTGAAGGTAATGAGAGAATTCTAGTTTATGAGTATATGTCCCAAGGGGCTCTCAGCAAACATCTTTTTCAATGGAAGAGCCTTAGGTTGGAGCCTCTTTCTTGGAAAAGGAGGCTCAACATTGCATTGGATGTTGCTAGAGGAATGGAGTATCTTCATAGCTTGGCTCATCAGAGCTTCATCCACAGAGATCTTAAGCCTTCCAATATTTTGCTTGGGGATGATTTTAGAGCCAAAGTCTCAGATTTTGGATTGGTTAAACTTGCTCCTGATGGTGAAAAATCTGTCGTAACTCAGCTTGCTGGGACATTTGGCTACTTAGCCCCAGAGTATGCAGTGACGGGAAAAATCACAACCAAAGCAGATGTCTTTAGTTTTGGAGTTGTGCTAATGGAGTTGTTGACTGGATTGATGGCACTTGATGAGGATAGACCTGAGGAAAGCCATTACTTGCCAGCATGGTTCTGGCATATAAAATCTGATAAGGAGAAACTTATGGCTGCTATTGATCCATCCCTAGACAAAAAAGAAGAAACTTTTGAGAGTATTACTGTCATTGCCGAGCTAGCTGGACACTGCACTGCAAGAGAACCAAGCCAACGACCAGATATGGGCCATGCTGTAAATGTTCTGGCTCCACTCGTTGAAAAATGGAAACCCTTTGATGATGACACCGAGGAGTATTCTGGAATTGATTATAGCCTTCCCCTTAATCAGATGGTGAAGGGTTGGCAAGAGGCAGAAGGGAAGGACTTGAGTTACATGGACCTGGAAGACAGCAAAGGTAGTATCCCCGCAAGGCCAACTGGATTTGCTGATTCTTTTACTTCTGCTGATGGTCGCTAA 2871 0.4375 MNHLALTMDEHLLKLVSALIILSLAVVAFCDTDPNDAKILSQFRKGLDNPELLPWPEDGGDPCGSPTWKYIFCKGNRVSQIQAKNLNLSGPLPQNFNQLSMLENIGLQNNKLNGPLPSFSGLSNLRYAYLDYNEFDSIPADFFDGLVSLEALALDYNNFNASTGWQFPSGLQDSSQLTNLTCMNCNLAGPLPIFLGNLSSLSVLRLSRNNLTGEIPATLSGSILQALWLNDQLNGGLTGTIDVVATMTSLTSLWLHGNHFTGRIPKNIGDLTSLKDFNLNFNQLVGEIPDALGKMKLDSLNLNNNHLMGPIPTFAAGNFSYDYNYFCQSKPGVPCSFEVTALLDFLDGVNYPLNLVESWSGNDPCKGPWLGITCDASGKVSMVNLPKFKLNGTLSPSLANLVSLVEIRLEGNNLSGQIPSNWTSLSSLTLLDLSDNNISPPLPHFSSKLKLVYAGNSLLNGNPEAPSSGNSSSSGNSIPSTDSPSPSTHTKSNPNTSPRSQNSSRKILVAIVAPVAGVVAAAFLLIPLIYCYKRRKDRPLAPLVIHPRDPSDPDNMVKIAVANNTYGSMSTLTGSGSGSRNGSGTGESHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTNIAVKRMEAGIISNKALDEFQSEIAVLSKVRHRHLVSLLGYSVEGNERILVYEYMSQGALSKHLFQWKSLRLEPLSWKRRLNIALDVARGMEYLHSLAHQSFIHRDLKPSNILLGDDFRAKVSDFGLVKLAPDGEKSVVTQLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESHYLPAWFWHIKSDKEKLMAAIDPSLDKKEETFESITVIAELAGHCTAREPSQRPDMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDLSYMDLEDSKGSIPARPTGFADSFTSADGR 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1180 956 FunFam Leucine-rich repeat receptor-like kinase 337 462 - -
Mibi02g1180 956 CDD STKc_IRAK 616 889 - -
Mibi02g1180 956 PANTHER OSJNBA0070M12.3 PROTEIN 18 956 - -
Mibi02g1180 956 SUPERFAMILY L domain-like 31 314 - -
Mibi02g1180 956 SMART LRR_typ_2 247 270 IPR003591 -
Mibi02g1180 956 SMART LRR_typ_2 146 169 IPR003591 -
Mibi02g1180 956 SMART LRR_typ_2 198 222 IPR003591 -
Mibi02g1180 956 SMART LRR_typ_2 122 145 IPR003591 -
Mibi02g1180 956 SMART LRR_typ_2 401 424 IPR003591 -
Mibi02g1180 956 SMART LRR_typ_2 271 295 IPR003591 -
Mibi02g1180 956 SMART LRR_typ_2 425 449 IPR003591 -
Mibi02g1180 956 SMART serkin_6 610 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi02g1180 956 Gene3D Ribonuclease Inhibitor 337 462 IPR032675 -
Mibi02g1180 956 Pfam Leucine rich repeat N-terminal domain 338 375 IPR013210 -
Mibi02g1180 956 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Mibi02g1180 956 Gene3D Ribonuclease Inhibitor 33 331 IPR032675 -
Mibi02g1180 956 FunFam receptor protein kinase TMK1 688 905 - -
Mibi02g1180 956 Pfam Leucine rich repeat 102 159 IPR001611 GO:0005515
Mibi02g1180 956 Gene3D Transferase(Phosphotransferase) domain 1 688 906 - -
Mibi02g1180 956 FunFam receptor protein kinase TMK1 572 687 - -
Mibi02g1180 956 MobiDBLite consensus disorder prediction 933 956 - -
Mibi02g1180 956 Gene3D Phosphorylase Kinase; domain 1 577 687 - -
Mibi02g1180 956 SUPERFAMILY L domain-like 338 450 - -
Mibi02g1180 956 FunFam Receptor-like kinase TMK4 34 332 - -
Mibi02g1180 956 Pfam Protein tyrosine and serine/threonine kinase 613 884 IPR001245 GO:0004672|GO:0006468
Mibi02g1180 956 ProSitePatterns Serine/Threonine protein kinases active-site signature. 735 747 IPR008271 GO:0004672|GO:0006468
Mibi02g1180 956 MobiDBLite consensus disorder prediction 462 503 - -
Mibi02g1180 956 SUPERFAMILY Protein kinase-like (PK-like) 587 886 IPR011009 -
Mibi02g1180 956 ProSiteProfiles Protein kinase domain profile. 610 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi02g1180 956 ProSitePatterns Protein kinases ATP-binding region signature. 616 638 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1180 Mibi-ChrMibi02 11684464 11687863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1180 88 923 Receptor kinase-like Gene Family AT1G55610 30.459 1.39e-83 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Mibi02g1180 PK_Tyr_Ser-Thr 1.3e-46 CL0016