Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1176 ATGGATCAAGTTGAGATTCCTGAGTACTTCATATGCCCCATATCCCTCCAAATCATGAAAGATCCAGTCACTGCCGTCACAGGCATCACCTATGATCGTGAAAGCATTGAACGTTGGCTCTACACAGCCAAAAACACCACATGCCCCGTAACCAAACAGACCCTTCCTTTAGACTCCGACCTGACACCAAATCACACCCTTCGCCGCCTCATCCAGGCTTGGTGCACTCAAAACGCATCCCTTGGCGTCGATCGGATTCCTACACCAAAACCACCACTTGACAAGTTTCAAGTCATGAAAATACTCTCCCATCTTCGCAGCCACAACTTATATCTCAAAGCTCTTAGGCATCTAGAACTTCTCGCCGCCGAGAACGAAAGGAACCGGAAGTGTTTGGCTGAGGCAGGTGTCCCCAAGGCCATGATCATGTTTGTTTTGGATTGTTATAAGAGGCGACACATTCGTGAGGGACTCGAAGAGGCTCTTAGTTTGTTACAGTTTGTCAAGGTTCCACAAGAGGAAATCGGTATGCTTCTTCGACAAAACGATTACCAGGTATTGGATTCTCTCACGTGGGTATTAGGTTGTGACATAATGGAAAACTCAATGACTCTCAAATCACACGCCATCATAGTGCTTAAAACGATCATCCAAAAAGCAAGCTCTGGTGTCATGGAGAGATTAAAACCTGAGTTCTTTGAAACAATAGTGAAGGTACTAAGAAATGGAATAACCCTACAAGGCATGAACGCTGGGCTGAAAGTGCTTTTAGCAGCTTGTCCATGGGGGAGAAATCGTGAGTTGATGGTGAAATCTGGTGCAGTTTATGAGTTGATTGAGATTGAACTTGGCTCGCCGGAGAAGAGGACGACGGAGATGATATTACGGATACAGTTTCATTTGTGTTCTTGTGCTAATGGGAGGGCACAATTTGTGAGTCACCGAGGTGGCATTGCGGTGTTGACGGAGAGGATGTTGAAGGTGTCGCCGGCGGCTGATGAGAGAATAATATTTGTTATGTCATTGGTATCAAAGTCATCTGCTTCACAAGTTGTGATACAGGAGATGGTTCAGCTTGGGACTTTGTCAAAGCTTTGTATGTTGCTTCAGGCTGATCATCCTTCTTATCTTAAAGACAAAGCAATGGAGATTCTTAAGTCCCATTCTGAGGTGTGGAAGAACTCTCCTTGCTTTCCTGCTTCTTTTAACGCAAGCTTTCACAGATAA 1227 0.4515 MDQVEIPEYFICPISLQIMKDPVTAVTGITYDRESIERWLYTAKNTTCPVTKQTLPLDSDLTPNHTLRRLIQAWCTQNASLGVDRIPTPKPPLDKFQVMKILSHLRSHNLYLKALRHLELLAAENERNRKCLAEAGVPKAMIMFVLDCYKRRHIREGLEEALSLLQFVKVPQEEIGMLLRQNDYQVLDSLTWVLGCDIMENSMTLKSHAIIVLKTIIQKASSGVMERLKPEFFETIVKVLRNGITLQGMNAGLKVLLAACPWGRNRELMVKSGAVYELIEIELGSPEKRTTEMILRIQFHLCSCANGRAQFVSHRGGIAVLTERMLKVSPAADERIIFVMSLVSKSSASQVVIQEMVQLGTLSKLCMLLQADHPSYLKDKAMEILKSHSEVWKNSPCFPASFNASFHR 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1176 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Mibi02g1176 408 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Mibi02g1176 408 Gene3D - 97 395 IPR011989 -
Mibi02g1176 408 PANTHER WDSAM1 PROTEIN 3 399 IPR045185 GO:0061630
Mibi02g1176 408 CDD RING-Ubox_PUB 10 53 IPR045210 -
Mibi02g1176 408 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Mibi02g1176 408 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Mibi02g1176 408 SUPERFAMILY ARM repeat 106 384 IPR016024 -
Mibi02g1176 408 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Mibi02g1176 408 SUPERFAMILY RING/U-box 3 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1176 Mibi-ChrMibi02 11610646 11611872 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1176 2 398 U-box Gene Family AT3G11840 43.439 1.98e-117 348