Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1175 ATGGACGAGAATATTGAGGTGCCTCCCTTCTTCCTGTGCCCAATCTCACTGGAAATAATGAAAGACCCGATCACAGTCTCCTCCGGCATCACCTACGACAGAGAAAGCATCGAGAAATGGCTCTTCTCCTCCAAAAACAACACCTGCCCTGTCACCAAAATCCCCCTCTCTGCTTCCGACCCCTCCGACCTCCTTCCCAACCACACTCTCCGCCGTCTGATCCAATCCTGGTGTACCATCAACGCCTCCCACGGCATCCAGAGAATCCCCACCCCTAAACCCCCAGTCACCAAAACCCAAATCTCCAAAATCATCAAAGACGCCTCTCATGATCAATCCCCCCATTCACCCCTCAAATCACTCCAAGCCCTCAAATCCATCGCTTCTGAGAGCGACGCCAATAAGCGAAGCATAGAAGCCGCCGGCGCCGTTGATTTCCTCGCATCCATTGTTCTCCGCCACACAAACTTCTCATACACCAACGGTGCAGATTATCTCAGCCCTGATGATGATGGCTTTCAGTTGAAAACCAACGGTGGAGATGAAGCCTTAAGCATCCTCCATAGTCTCCATCTCTCTGAGGCTGGATTCAAGAACCTAGTAACCTTCGAAAATGGGTCATTCATAGAATGCTTGACCAGAATCATGCAGAGAGGATTCTACGAGTCACGAGCTTACGCTGTTTTATTGTTGAAATCCATGTTTGAAGTGGCAGATCCAACGGTTTTGTCCCATTTAAAACAAGACATGTTCCTTGAGTTAGTTCAGCTCTTGAAAGACCAGATATCACAGCAGGCATCAAAGGCTGCTTTAAGAGCACTGATACAGATATGTCCGTGGGGGAGGAACAGAATAAGGGCGGTAGAAGCAGGGGGTGTGTCTGTGTTGATAGAGCTTCTTTTGGATTGTAAGGATAGGAAGCCATGTGAGATGATGATGGTTTTGTTGGAGATGTTGTGTGGTTGTGCAGAGGGAAGAGCAGAGTTACTGAGTCATGGGGCAGGAATCGCCATCGTTTCGAAGAAGATTCTGAGGGTTTCGACGATGGCTAATGATAGGGCGGCGAGGATTTTGTTGTCCATTGCAAAGTTCTCTGCAACTCCTAGTGTTTTGCAGGAACTGTTGCAGGTTGGGGTGGTGGCCAAGTTGTGTTTGGTGCTTCAAGTTGAGAGTGGGAGAAAGGCTCAGGAAAAAGCTAGAGAGATTCTTAGAATGCATGCTCGGGCTTGGAAGAATTCTCCTTGCATACCAACCAATTTGCTTTCTTCTTACCCGAATTGA 1281 0.4832 MDENIEVPPFFLCPISLEIMKDPITVSSGITYDRESIEKWLFSSKNNTCPVTKIPLSASDPSDLLPNHTLRRLIQSWCTINASHGIQRIPTPKPPVTKTQISKIIKDASHDQSPHSPLKSLQALKSIASESDANKRSIEAAGAVDFLASIVLRHTNFSYTNGADYLSPDDDGFQLKTNGGDEALSILHSLHLSEAGFKNLVTFENGSFIECLTRIMQRGFYESRAYAVLLLKSMFEVADPTVLSHLKQDMFLELVQLLKDQISQQASKAALRALIQICPWGRNRIRAVEAGGVSVLIELLLDCKDRKPCEMMMVLLEMLCGCAEGRAELLSHGAGIAIVSKKILRVSTMANDRAARILLSIAKFSATPSVLQELLQVGVVAKLCLVLQVESGRKAQEKAREILRMHARAWKNSPCIPTNLLSSYPN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1175 426 PANTHER WDSAM1 PROTEIN 4 417 IPR045185 GO:0061630
Mibi02g1175 426 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Mibi02g1175 426 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Mibi02g1175 426 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Mibi02g1175 426 CDD RING-Ubox_PUB 11 53 IPR045210 -
Mibi02g1175 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Mibi02g1175 426 SUPERFAMILY ARM repeat 97 412 IPR016024 -
Mibi02g1175 426 Gene3D - 99 416 IPR011989 -
Mibi02g1175 426 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Mibi02g1175 426 SUPERFAMILY RING/U-box 4 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1175 Mibi-ChrMibi02 11569367 11570647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1175 1 425 U-box Gene Family AT2G35930 55.944 5.16e-169 478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1175 02 11569367 11570647 Mibi02g1175 02 11569367 11570647 ECH