Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1170 ATGAATGACTTGTTATCGTCGCCGGCCCGTCACCACCACCACCACCACCACGACCTCGAGATGGGCTCCGTCGCCGCCTCCACCGGCGGCGGAAACCTCGATGAGTTCTTTGAGGACGTAGATTCCATAAAGGAGGAGCTGAAAGAGCTCGAAAGACTGAACCAAAATCTGCAGGGTTCTCACGAGCAGAGCAAAACCCTACACAATGCGAAGGCCGTCAAGGACCTTCGCTCTCGAATGGACGGCGACGTCGCTCTTGCTCTGAAGAAGGCCAAGCTCGTGAAGGTCAAATTGGAGGCTCTGGAGCGATCCAACGCCGCCAGCCGGAGCCTTCCAGATTGTGGGCCCGGTTCTTCGTCGGACCGGACTCGGACCGCCGTGGTGGGCGGTTTGAAGAAGAATCTGAAGGATTCCATGGATAGTTTCAATGAACTCAGGCAGCGTATCTCCTCCGAGTACAGGGAGACCGTACAACGCAGGTATTTCACGGTCACCGGGGAGAACCCCGACGAGAACACCATCGACCTCCTCATTTCTACAGGTGAGAGTGAGACGTTCCTTAGGAAAGCCATTCAAGAGCAAGGCAGGGGAAGAATACTGGACACCATCAATGAAATTCAAGAGAGGCACGATGCAGTAAAGGATATGGAGAAGAATCTGCAGGAGTTGCATCAAGTGTTCCTGGACATGGCAGTGCTGGTTCAATCCCAAGGTGAGCAATTGGATGATATTGAGAGCCACGTGGCCAGGGCGAACTCTTATGTGAAGAGGGGAACCCAGAAGCTGCAAACAGCAAGGAAGCACCAGAAAAACACTAGGAAATGGACCTGTTATGCCATTATTCTTCTGCTTGTTATTATCTTGTTCGTTGTGCTCTTCACTGTGAGACCATGGCAAAATAATGGTGGTAGTCCATCTTCTTCATCACCGCAAACACCTGCTACAACACCACCACCTCCTCCTCCTCCTTCTGCTTAA 978 0.5235 MNDLLSSPARHHHHHHHDLEMGSVAASTGGGNLDEFFEDVDSIKEELKELERLNQNLQGSHEQSKTLHNAKAVKDLRSRMDGDVALALKKAKLVKVKLEALERSNAASRSLPDCGPGSSSDRTRTAVVGGLKKNLKDSMDSFNELRQRISSEYRETVQRRYFTVTGENPDENTIDLLISTGESETFLRKAIQEQGRGRILDTINEIQERHDAVKDMEKNLQELHQVFLDMAVLVQSQGEQLDDIESHVARANSYVKRGTQKLQTARKHQKNTRKWTCYAIILLLVIILFVVLFTVRPWQNNGGSPSSSSPQTPATTPPPPPPPSA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1170 325 CDD SNARE_syntaxin1-like 202 264 - -
Mibi02g1170 325 Coils Coil 33 67 - -
Mibi02g1170 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Mibi02g1170 325 MobiDBLite consensus disorder prediction 300 325 - -
Mibi02g1170 325 PANTHER SYNTAXIN 45 287 IPR045242 -
Mibi02g1170 325 Gene3D - 200 296 - -
Mibi02g1170 325 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mibi02g1170 325 Coils Coil 203 223 - -
Mibi02g1170 325 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Mibi02g1170 325 CDD SynN 33 190 IPR006011 GO:0016020
Mibi02g1170 325 Gene3D - 31 163 - -
Mibi02g1170 325 MobiDBLite consensus disorder prediction 311 325 - -
Mibi02g1170 325 MobiDBLite consensus disorder prediction 1 25 - -
Mibi02g1170 325 FunFam Syntaxin 132 196 296 - -
Mibi02g1170 325 SMART SynN_4 28 154 IPR006011 GO:0016020
Mibi02g1170 325 SMART tSNARE_6 198 265 IPR000727 -
Mibi02g1170 325 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Mibi02g1170 325 SUPERFAMILY t-snare proteins 31 258 IPR010989 GO:0016020|GO:0016192
Mibi02g1170 325 Pfam SNARE domain 239 291 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1170 Mibi-ChrMibi02 11523849 11525500 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1170 21 321 SNARE and Associated Proteins AT3G11820 72.403 3.93e-154 432