Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi02g1169 | ATGGCGCTAGGAAAGACACCGTCGAGTTCAACTGAAGAGGACCCTCCAATCTCTCCCGCTTTGCTGTGTCCCGAAACACAAGTTTCAGACTTTGTCCTTCTTCTCCCATTACTCCCTTCTCAACCCATTCCCTCCAACCTCTCTGGAAGTGGAATGAACGACCTGTTCTCCGGCTCCTTCTCTCGCTTCCGCGGCGAGCAAGTCTCGCCGGACAACCACCACCACGTCATTCAAATGACGGAAACCTCGCCGTCGATCAAAGACGGAGTCAACCTCGACAAATTCTTCTCTGAAGTGGAGTCCGTCAAGGATGAGCTCAAGGAGCTAGAGAGGCTCAACCAGAGCCTACGTGGGTCCCACGAACAGAGCAAGGCACTTCACACCGCAGAATCCGTGAAGGAGCTTCGTTCTCGCATGGACGCCGACGTGGCCCTCTCTCTCAAGAAAGCCAAGCTCATTAAGATTCGCTTGGAAGCACTGGACCGGTCCAACGAAGCCAACCGGGCTCTTCCTGGTTGCGGACCCGGTTCATCCTCCGACCGGAGTCGGACCTCCGTGGTGAGCGGTCTGAGGAAAAAGCTGAAAGACTCCATGGACAGCTTCAACAACCTGCGCCAAAAGATATCGTCGGAGTACAGGGAAACCGTGCAACGTAGGTACTTCACAGTCACCGGCGAGAATCCCGACGACAACACCATAGACCTCCTCATCTCCACAGGTGAAAGCGAGACATTCTTGAAGAAGGCAATACAAGAGCAGGGGAGGGCGAGCGTAATGGAGACGATAAAGGAGATACAAGAGAGGAATGAGGCGGTGAGGGAGATAGAGAGGAATCTGAATGAACTGCATCAAGTGTTCATGGACATGGCCGTGTTGGTGCAGTCTCAGGGGGAACAATTGGACGACATTGAGAGTCACTTGGCTCGAGCTAATTCCTTTGTAAGGAGTGGGGTCCAACAGCTCCATGTTGCTAAGAAGCACCAGAAAAACACTCGCAAGTGCACCTATTTTGCCATCTTACTGCTCCTCATCGTCGTCTTGCTTATACTTCTCCCCATTCTTCTCAGAAGAAGCTGA | 1077 | 0.5274 | MALGKTPSSSTEEDPPISPALLCPETQVSDFVLLLPLLPSQPIPSNLSGSGMNDLFSGSFSRFRGEQVSPDNHHHVIQMTETSPSIKDGVNLDKFFSEVESVKDELKELERLNQSLRGSHEQSKALHTAESVKELRSRMDADVALSLKKAKLIKIRLEALDRSNEANRALPGCGPGSSSDRSRTSVVSGLRKKLKDSMDSFNNLRQKISSEYRETVQRRYFTVTGENPDDNTIDLLISTGESETFLKKAIQEQGRASVMETIKEIQERNEAVREIERNLNELHQVFMDMAVLVQSQGEQLDDIESHLARANSFVRSGVQQLHVAKKHQKNTRKCTYFAILLLLIVVLLILLPILLRRS | 358 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi02g1169 | 358 | SMART | tSNARE_6 | 257 | 324 | IPR000727 | - | |
| Mibi02g1169 | 358 | SUPERFAMILY | t-snare proteins | 90 | 317 | IPR010989 | GO:0016020|GO:0016192 | |
| Mibi02g1169 | 358 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 89 | 219 | - | - | |
| Mibi02g1169 | 358 | Coils | Coil | 258 | 285 | - | - | |
| Mibi02g1169 | 358 | Gene3D | - | 250 | 355 | - | - | |
| Mibi02g1169 | 358 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Mibi02g1169 | 358 | CDD | SynN | 92 | 249 | IPR006011 | GO:0016020 | |
| Mibi02g1169 | 358 | Pfam | Syntaxin | 94 | 297 | IPR006011 | GO:0016020 | |
| Mibi02g1169 | 358 | CDD | SNARE_syntaxin1-like | 261 | 321 | - | - | |
| Mibi02g1169 | 358 | SMART | SynN_4 | 87 | 213 | IPR006011 | GO:0016020 | |
| Mibi02g1169 | 358 | FunFam | Syntaxin 132 | 255 | 355 | - | - | |
| Mibi02g1169 | 358 | Gene3D | - | 90 | 222 | - | - | |
| Mibi02g1169 | 358 | PANTHER | SYNTAXIN | 97 | 348 | IPR045242 | - | |
| Mibi02g1169 | 358 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Mibi02g1169 | 358 | Coils | Coil | 92 | 126 | - | - | |
| Mibi02g1169 | 358 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 262 | 324 | IPR000727 | - | |
| Mibi02g1169 | 358 | MobiDBLite | consensus disorder prediction | 166 | 187 | - | - | |
| Mibi02g1169 | 358 | Pfam | SNARE domain | 298 | 350 | IPR000727 | - | |
| Mibi02g1169 | 358 | ProSitePatterns | Syntaxin / epimorphin family signature. | 268 | 307 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi02g1169 | Mibi-ChrMibi02 | 11519667 | 11521792 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi02g1169 | 89 | 335 | SNARE and Associated Proteins | AT3G11820 | 73.279 | 2.25e-133 | 381 |