Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1166 ATGTCCAATTCCCATGCCAGGCCTTTAGTATCTATCTCTCTCTCTCTCTCTATGGCTGCCTCAACTTCTCCTTCTTCTTCCCTCTGCAATAGACTCCACAGCCTCTACGTCACTCCTTCTTCCTTCTCTATTACCCTCAAATTCCCTCCCTCCCCCATCTCCCTCAAACCTCCCAACCTCAATCTCAAATCCCACTTCCCCAATTCCCCTCCTCTCTCTCCCTACAATCTTCGTCTCTCTTCCGCCGCCTTCGATGGCTTCGACGTCTCTCAAGACACCTCAACCTCTGACCAGGTACAGGTACCACCACAAGCCCAACAAGAGCCCTCTCAAAAATCGATACAAGAAGAGGATGACCAAAAGGAATCTGACTCAAACGAAGCTGGGAGGATCTATGTGGGAAATTTGCCCTTCTCCATGACTTCTTCCCAGTTGTCTGAGATTTTTCAAGAGGCTGGCAATGTGCTGTCTGTTGAGATAGTATATGATCGCGTCACGGATAGAAGCAGAGGATTTGCATTTGTCACAATGGGAACTGCTGAGGAAGCTAAAGAAGCCATTGGGATGTTTGATGGCTCTCAAGTTGGAGGTAGGACGGTGAAGGTAAACTTCCCAGAAGTGCCAAGAGGAGGTGAAAGGCTAGTGATGGGGCCAAAAGTGAAGAACAACTACAGAGGCTTCGTGGACAGTCCTCACAAGATATATGCTGGGAACCTTGGATGGGGATTGACTTCACAGGGTCTGAGAGATGCTTTTGCTGGTCAGCCTGGCTTTTTGAGTGCCAAGGTCATCTATGAAAGGGACACCGGAAGATCTCGAGGCTTCGGGTTCGTCTCCTTCGAGACCGCTGAGGATGTTGAGGCTGCTTTGAATGCTATGAACGGTGTGGAGGTTCAAGGCAGGGATCTGAGACTGAATTTGGCTGCAGAGAGGACGAGTGCTTCTCCTCCAACAATGGATGAGGCTGTACAAGATAGTGTTGATAGCTCCGAGTTGGTGTCTAGTGTGAGCACATGA 1017 0.4946 MSNSHARPLVSISLSLSMAASTSPSSSLCNRLHSLYVTPSSFSITLKFPPSPISLKPPNLNLKSHFPNSPPLSPYNLRLSSAAFDGFDVSQDTSTSDQVQVPPQAQQEPSQKSIQEEDDQKESDSNEAGRIYVGNLPFSMTSSQLSEIFQEAGNVLSVEIVYDRVTDRSRGFAFVTMGTAEEAKEAIGMFDGSQVGGRTVKVNFPEVPRGGERLVMGPKVKNNYRGFVDSPHKIYAGNLGWGLTSQGLRDAFAGQPGFLSAKVIYERDTGRSRGFGFVSFETAEDVEAALNAMNGVEVQGRDLRLNLAAERTSASPPTMDEAVQDSVDSSELVSSVST 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1166 338 MobiDBLite consensus disorder prediction 311 338 - -
Mibi02g1166 338 SMART rrm1_1 233 306 IPR000504 GO:0003723
Mibi02g1166 338 SMART rrm1_1 130 203 IPR000504 GO:0003723
Mibi02g1166 338 SUPERFAMILY RNA-binding domain, RBD 129 310 IPR035979 GO:0003676
Mibi02g1166 338 MobiDBLite consensus disorder prediction 112 126 - -
Mibi02g1166 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Mibi02g1166 338 MobiDBLite consensus disorder prediction 90 127 - -
Mibi02g1166 338 PANTHER OS02G0815200 PROTEIN 53 311 - -
Mibi02g1166 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 201 IPR000504 GO:0003723
Mibi02g1166 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 303 IPR000504 GO:0003723
Mibi02g1166 338 FunFam 33 kDa ribonucleoprotein, chloroplastic 214 318 - -
Mibi02g1166 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 310 IPR000504 GO:0003723
Mibi02g1166 338 CDD RRM_HP0827_like 130 206 - -
Mibi02g1166 338 Gene3D - 216 318 IPR012677 -
Mibi02g1166 338 MobiDBLite consensus disorder prediction 90 111 - -
Mibi02g1166 338 Gene3D - 85 212 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1166 Mibi-ChrMibi02 11506838 11508329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1166 112 311 Eukaryotic Initiation Factors Gene Family AT3G16380 29.412 4.22e-19 86.3