Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1159 ATGACCCGTTTCTCAGAGAAGATCCGTTTTTCTTCTCTGGTCGTAAAACCGACCCGTTTTCTCTCTCTACTCTCTCTCTCCACCTTCCGTCTCTGCAACTCCCTCGCTCGCTCCCTACTCTCCAAAACCCTTTCCTTCCTCACGATGGACAGTTTATTCTCCGATCGGGATGATTTCTTTTGGGACCTGGATTCACGTCCTCAACGTCGCTTTGCACGAGAAGAAGAGCATCAATTGGAGAATGAGCCTCTCTATTTGGTTCTTTACCGGTGGTGGAAGGAAGTACAAGGGGATGCTGATCGAGTAGAACATGTTTTATATACGGTATCAACGAACTCTGATTTTGATTGTGACTCAGAAATTGTACTTCAGTTAAGAAAGGAAGACGACCGGCATGAAACGATAAATAGTGATGTGGGATCTTCAGGTCGTCATTATGCGTTGGTTCCTGAAGGTTTGTGGTTGCGTGCTCTTAAAAGGTGTAGTGATAATAATAATGCAGTAAAAGATTTTGGGAGCTTCTTCGATACAGATGATTGTCTGCCAGATTTGTTCTCCTTGCAAGTTAGGATATTTGTTTCTTGGGAAGCAAATTCATTGGAAGCGAATATAAGCCAAAAGGAAAATGGGGTTGATGTCTACATGAAAGCCCGCAATATTTTCAGCTCTGAATATAATCCAGTACACATTTTGGATTTCTCAGGCCAGACAAATCAATTTTTCATAGAAGATAATGAGTATTCTGGGCAACTTGAAAAGGGGGTTCTCCTGGAGCTGCAAGTTTATGGACTATCTGATTTTATAAAGGTTAATGGAAGCAATGGGATGTTTGTAGATGGACCTACAGTAGGATGTTCGTCTTACAGTGGCTCTGTTATGACGAATGGGACTACTCACGATGTGAATTCCAATGTAACAACTATCAACTCCTTTCAAAGGAACAGCTATAAAGCAGTTGGTTCTTTGGGATTGACAGGATTACAGAATCTTGGAAACACTTGTTTTATGAATAGTGCCATTCAATGTTTGGTTCACACCCCCAAGCTTGTTGACTATTTCCTGGGAGATTACCGTAAAGAAATAAATTATGAAAATCCCTTGGGAATGAATGGAGAACTTGCTTTAGCTTTTGGGGATTTACTTAGAAAGTTGTGGTTTCCTGGAGCAAGGCCTGTGGCACCAAGAATGTTCAAGATGAAGCTTGCTAATTTTGCTCCTCAATTTAGCGGTTATAACCAGCATGATTCTCAAGAACTTCTTGCTTTTTTGTTGGATGGACTCCATGAAGACCTTAATCGTGTAAAGCGCAAACCATATCATGAAGTTAAAGATGAAGATGGTCGTCCAGATGAAGAAGTAGCAGAAGAATATTGGCATAATCATCTTGCTCGCAATGACTCTATCATTGTTGATTTGTGCCAAGGTCAGTTCCGTTCAACATTGGTATGCCCTGTTTGCAAGAAGGTTTCTATAACTTTTGACCCTTTTATGCACCTGTCTTTGCCATTACCTTCCACAACAATGCGGACAATTACTTTGACTGTCCTGAGCACCGATGGAACTGCCCTTCCATCCACATTTACCATAACATTACCCAAGAGTGGATTATTGAAGGACCTTATCGAGGCCTTAGGTGATGCATGTTCGTTAAGAGAAGATGAGACGCTCTTGGTAGCTGAGATATACAGGAATCGCATCTGTCGCTTGCTGGAGGAACCATATGATTCACTAGATTTGATTAGAAATGAGGACAAATTAGTTGTTTATCGATTGCCTAAAGATGAGGCTGGCCCCTTGGTTGTTTTCACGCATCAGCAGGTGGCGAAGGAGAAGTTGGTAGAAAGTTTGTTTGGCATTCCTATTGTGGCAAGGTTGCCCAATATTTCCTGTGGATATGACATTCGTAGGGAGTTTCTGAAGTTAATTCACCCATTTCTGATGCTGTCTGAAGATTTCTTAGATGAGCGTGATAATGATATCGAAGTTAGTAAGGATAATGAGTTGAGTGATGCCACTGGTTCTGCATGCTTGGAAGGTGATTCAGATTCAGATTCAGATTTGGAGGCTGACTTTAAATTCTACTCAACTGCAACATTAGGAATGGAGAATGTGGAGATAAAAATGAATGAACCATTACCATTCACACTGCTACCCAAAAAGCTCGAGGTTTCAGTCTTATGGTCAGATAAGATGATAGAAAAATATGATACATGCCTACTCAGCTCATTGCCTGAGGTTTTCAAGCCACAGATTTTCGCCAAGAGAACACAAGAATCTGTTTCTGTTTACAAATGCCTTGAAGCATTCTTAAAAGAGGAGCCTCTTGGGCCAGATGACATGTGGTTCTGTCCTAAATGCAAAGAGCCTCAGCAAGCGACCAAAAAACTAGATCTTTGGAGATTACCTGAAATTCTTGTTGTTCATTTGAAGAGGTTTTCATTCAACCGATACTTCAAGAACAAGCTAGAAACATTTGTCGATTTCCCGATCGATGATTTGGACCTGTCAACGTATGTTGCACACAAGAATAGCCCATCTTCCCCCCATTACCAGTTGTATGCGATCAGTTGTCATTATGGAGGCTTGGGAGGAGGTCATTATACTGCATTTGTTCGTTATGGACACGATAAATGGTACGAGTTTGACGATAGCAGGGTTGTCCCTGTCAGCGAGGACATGGTAAAGACTTCCGCTGCTTATGTTCTTTTCTATAGAAAAGTTTAG 2724 0.4137 MTRFSEKIRFSSLVVKPTRFLSLLSLSTFRLCNSLARSLLSKTLSFLTMDSLFSDRDDFFWDLDSRPQRRFAREEEHQLENEPLYLVLYRWWKEVQGDADRVEHVLYTVSTNSDFDCDSEIVLQLRKEDDRHETINSDVGSSGRHYALVPEGLWLRALKRCSDNNNAVKDFGSFFDTDDCLPDLFSLQVRIFVSWEANSLEANISQKENGVDVYMKARNIFSSEYNPVHILDFSGQTNQFFIEDNEYSGQLEKGVLLELQVYGLSDFIKVNGSNGMFVDGPTVGCSSYSGSVMTNGTTHDVNSNVTTINSFQRNSYKAVGSLGLTGLQNLGNTCFMNSAIQCLVHTPKLVDYFLGDYRKEINYENPLGMNGELALAFGDLLRKLWFPGARPVAPRMFKMKLANFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDEDGRPDEEVAEEYWHNHLARNDSIIVDLCQGQFRSTLVCPVCKKVSITFDPFMHLSLPLPSTTMRTITLTVLSTDGTALPSTFTITLPKSGLLKDLIEALGDACSLREDETLLVAEIYRNRICRLLEEPYDSLDLIRNEDKLVVYRLPKDEAGPLVVFTHQQVAKEKLVESLFGIPIVARLPNISCGYDIRREFLKLIHPFLMLSEDFLDERDNDIEVSKDNELSDATGSACLEGDSDSDSDLEADFKFYSTATLGMENVEIKMNEPLPFTLLPKKLEVSVLWSDKMIEKYDTCLLSSLPEVFKPQIFAKRTQESVSVYKCLEAFLKEEPLGPDDMWFCPKCKEPQQATKKLDLWRLPEILVVHLKRFSFNRYFKNKLETFVDFPIDDLDLSTYVAHKNSPSSPHYQLYAISCHYGGLGGGHYTAFVRYGHDKWYEFDDSRVVPVSEDMVKTSAAYVLFYRKV 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1159 907 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 325 907 IPR028889 -
Mibi02g1159 907 Pfam Ubiquitin carboxyl-terminal hydrolase 325 904 IPR001394 GO:0004843|GO:0016579
Mibi02g1159 907 Gene3D Cysteine proteinases 309 528 - -
Mibi02g1159 907 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 850 867 IPR018200 GO:0004843|GO:0006511
Mibi02g1159 907 SUPERFAMILY Cysteine proteinases 323 906 IPR038765 -
Mibi02g1159 907 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 326 341 IPR018200 GO:0004843|GO:0006511
Mibi02g1159 907 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 282 906 - -
Mibi02g1159 907 Gene3D Cysteine proteinases 584 907 - -
Mibi02g1159 907 CDD Peptidase_C19R 735 905 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1159 Mibi-ChrMibi02 11428953 11436582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1159 761 907 Miscellaneous Gene Families AT4G31670 34.667 2.46e-18 88.2