Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1125 ATGTCTGCAGCTATGAGAACTTCATGGGCAGATTCTGTCGACAACTCAGCCATTGGTACTCCAAATGCCAATGCCACGCGTCCTTCTCGGTCAGCGTATGTTCCCCCACATCTTCGTAATAAGCCACCGTCTTCAGAACCCCCCTTGACATCACACCCATCTTCGTTACCAGCCAATGATCTGGTAAATTTTGGTGGGTCAACTGCTGGGTATCGTGGAGGTAATTTCTTTAATAAACCTGACTATGGAAGGCAGGACTATGGTTCTAGTGGTCGAATTGGTGGGGGTTGGAACAATAGAAGCGGAGGGTGGGACCGTGGAAGGGAACGTGAGGTTAACCCATTTGAGAATGATGCTACAGATAATGCTCTTAGTGAGCAAGAAAACACAGGCATTCACTTCGATGCTTATGATGATATCCCTGTGGACACTAGTGGGGAGAATGTTCCTCCACCTGTAAATGCTTTCGCAGAAATAGACTTAGGTGAGGCAGTGAATCAAAATATAAGGAGGTGTAAATACGTCAAACCAACTCCAGTTCAGAGGTATTCAATACCAATTTCTCTTGCGGGGCGAGATCTGATGGCTTGCGCTCAGACCGGATCAGGCAAGACAGCTGCTTTCTGTTTTCCTATCATAAGTGGAATTCTGAGGATGCCACATGTTCAAAGACCACGTGTAGCACGGACTGCTTTCCCCCTTGCTCTTATCCTATCTCCTACCCGGGAGCTTTCATGTCAGATACATAACGAGGCTAAAAAGTTTTCCTATCAAACTGGTGTTAAGGTGGTAGTTGCTTATGGAGGAGCACCAATCAACCAACAGCTGCGGGAGCTTGAGAGAGGAGTTGATATTCTTGTGGCAACTCCAGGACGTCTGGTAGATTTGTTAGAGAGGGCTAGGGTATCACTACAAATGATCAGATATTTAGCTCTCGATGAAGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAAATAGTTGAACAAATGGACATGCCTCCTCAAGGCATGAGACAAACAATGCTGTTTAGTGCCACTTTTCCCAAAGAGATACAGAGGCTTGCATCAGATTTCCTTGACAATTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGACCTAATTGCTCAACGAGTGGAATATGTCATGGAGTCTGACAAAAGAAGTCACCTCATGGATCTTCTTCACGCCCAGAGGGAAAATGGTATTAATGGCAAGCAAGGTCTGACATTGGTTTTTGTCGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGGTTGTGTATTAATGGGTTTCCTGCAACTAGCATCCATGGTGACCGATCACAGCAGGAAAGGGAGCTAGCATTAAGGTCGTTCAAGAGTGGAAACACACCAATTTTAGTGGCAACTGATGTTGCAGCCCGTGGTCTTGATATTCCCCGTGTGGCTCATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTACATCGGATAGGAAGAACAGGTAGGGCTGGTAAAATGGGTTTAGCAACAGCCTTCTTTAATGACAATAATCTGTCATTGGCCAAGCCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTCACGCGCTATGCAGCTAGAGCTTCTTATGGTGGTGGCAACAGAAATCGGCGTTCAGGAGGAGCCCGTTTTGGTGGCCGTGATTATAGGAGGGACAACCAACATAATAAAGGAGTTGACTACTATGGTGGAGCTAGTGGATACGGGGTTCCTGCCACTTATGGTGGAGGGTACGGTCCTCCAGGGGTTGCTAGCGCTTGGGATTAG 1833 0.4621 MSAAMRTSWADSVDNSAIGTPNANATRPSRSAYVPPHLRNKPPSSEPPLTSHPSSLPANDLVNFGGSTAGYRGGNFFNKPDYGRQDYGSSGRIGGGWNNRSGGWDRGREREVNPFENDATDNALSEQENTGIHFDAYDDIPVDTSGENVPPPVNAFAEIDLGEAVNQNIRRCKYVKPTPVQRYSIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRMPHVQRPRVARTAFPLALILSPTRELSCQIHNEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPQGMRQTMLFSATFPKEIQRLASDFLDNYVFLAVGRVGSSTDLIAQRVEYVMESDKRSHLMDLLHAQRENGINGKQGLTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNLSLAKPLADLMQEANQEVPAWLTRYAARASYGGGNRNRRSGGARFGGRDYRRDNQHNKGVDYYGGASGYGVPATYGGGYGPPGVASAWD 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1125 610 Gene3D - 371 552 IPR027417 -
Mibi02g1125 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 547 IPR001650 -
Mibi02g1125 610 FunFam Probable ATP-dependent RNA helicase DDX4 117 371 - -
Mibi02g1125 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 523 IPR027417 -
Mibi02g1125 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 369 IPR014001 -
Mibi02g1125 610 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 124 547 - -
Mibi02g1125 610 Pfam DEAD/DEAH box helicase 178 358 IPR011545 GO:0003676|GO:0005524
Mibi02g1125 610 SMART helicmild6 427 508 IPR001650 -
Mibi02g1125 610 FunFam ATP-dependent RNA helicase RhlB 372 551 - -
Mibi02g1125 610 MobiDBLite consensus disorder prediction 1 29 - -
Mibi02g1125 610 MobiDBLite consensus disorder prediction 1 61 - -
Mibi02g1125 610 SMART ultradead3 173 384 IPR014001 -
Mibi02g1125 610 MobiDBLite consensus disorder prediction 87 109 - -
Mibi02g1125 610 Pfam Helicase conserved C-terminal domain 393 508 IPR001650 -
Mibi02g1125 610 CDD DEADc_DDX3_DDX4 156 375 IPR044763 GO:0003724|GO:0005524
Mibi02g1125 610 Gene3D - 110 370 IPR027417 -
Mibi02g1125 610 MobiDBLite consensus disorder prediction 563 579 - -
Mibi02g1125 610 CDD SF2_C_DEAD 381 517 - -
Mibi02g1125 610 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 154 182 IPR014014 GO:0003724
Mibi02g1125 610 MobiDBLite consensus disorder prediction 554 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1125 Mibi-ChrMibi02 11168209 11173004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1125 152 540 Eukaryotic Initiation Factors Gene Family AT3G19760 31.282 6.54e-60 203