Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1099 ATGGGGGAAGAGACATCGGACGCGATGAACCTTGATTTGAATCTGGGTCCTGATCCAGAGCCAGCCACCAATGAATCCGTGAGCTTGGAGGATTGGATTGAAGAGCCTAGGATTAGCGAATCAGTTAGACATAGGACTCGACAGAGGTGGAGATGGCGGCATCTTCACGTTAATCCTCCTGAACCCCATCGCAGCCTTTTTATTTCACCTGAAGCAAATCGGCGTTTTATTATGGCTCCCGAAGCCCACGCTATTTCAATGCGATTGAATGAATTGTTGGCCAGCCCTGGACCTGGTAATGGAAGTGTGTTACAGGCTGGGGAAGGTAGCGTGGCAGCTGAAGAAAGAACAGAGGTGACACCCAAAGCATGTGAAACAAACAATGGTGTTTTGGAGGATGGAGCATCAGATAAGAAGGATGATGTTGAAAAGGGTAGTGGCAATGATGGGAGCTTTTTTGATTGTAATATCTGTTTGGACCTGGCTAGAGATCCTGTTGTGACTTGCTGTGGTCATTTGTTTTGTTGGCCATGCCTCTATCGGTGGCTACATGAGCATTCAGAAGCTAAGGAATGCCCAGTTTGCAAGGGAGAGGTGACCTTTAAAAATGTTACACCAATATATGGCCGTGGAAACAATGTCCGTGAACCTGAGGAATATCCTACTCTTAAAGTCCCCATTAGACCCCATGCTAGGCGTGTTGAAAGTCTGAGACAAACCATTCATCGAAATGCATTTGCATTCCCAGTGGAAGAGATGATTCGGCGTCTTGGAAGTAGATTTGACCTCTCTCGAGATGTAGGCCAGCCACACGAGACTGACAATGCCCGGGAAGCAGCTGACAGAACTACTACCTTGTTAAATAGATTTTTGACCTCTCGAGCGTTACGAAGAGAGCATATGCATGGGGCAACTGCAGATGATGCAGTGGACTTGACTCAAAACAACATTGATGGCCCTGAGGCAAGGGATAACCACCGGGCTCAATCCCTACTACTTCGAAGAACACAGTCACATAGAACATCACTTTCTTCTCTTGCATCAGCTCTGAGTTCTGCTGATAGATTTGTTGAGGCATATGTCCGTAGCCATTATATTGGTAGAAACCAAGAGCAACCTCCGCCAGTTGATGATAGAGATTCCTTTTCAAGTGTTGCTGCTGTTATACACTCAGAGAGTCAAGTAGACACTGCTGTAGAAATTGATTCCATGGTCTCTTTGTCAACATCCTCTTCCAGGAGGAGAAATGATGCATCTCGGGTTTCTGATGTGGATAGTGGAGATTCTCGGGCCCCCAGACGAAGACGTTTGAACTGA 1317 0.4662 MGEETSDAMNLDLNLGPDPEPATNESVSLEDWIEEPRISESVRHRTRQRWRWRHLHVNPPEPHRSLFISPEANRRFIMAPEAHAISMRLNELLASPGPGNGSVLQAGEGSVAAEERTEVTPKACETNNGVLEDGASDKKDDVEKGSGNDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHEHSEAKECPVCKGEVTFKNVTPIYGRGNNVREPEEYPTLKVPIRPHARRVESLRQTIHRNAFAFPVEEMIRRLGSRFDLSRDVGQPHETDNAREAADRTTTLLNRFLTSRALRREHMHGATADDAVDLTQNNIDGPEARDNHRAQSLLLRRTQSHRTSLSSLASALSSADRFVEAYVRSHYIGRNQEQPPPVDDRDSFSSVAAVIHSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1099 438 SUPERFAMILY RING/U-box 151 208 - -
Mibi02g1099 438 MobiDBLite consensus disorder prediction 405 438 - -
Mibi02g1099 438 CDD RING-HC_AtRMA_like 153 197 - -
Mibi02g1099 438 MobiDBLite consensus disorder prediction 1 27 - -
Mibi02g1099 438 Pfam Zinc finger, C3HC4 type (RING finger) 155 195 - -
Mibi02g1099 438 MobiDBLite consensus disorder prediction 416 438 - -
Mibi02g1099 438 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
Mibi02g1099 438 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Mibi02g1099 438 SMART ring_2 155 195 IPR001841 -
Mibi02g1099 438 FunFam Zinc finger family protein 136 209 - -
Mibi02g1099 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 241 IPR013083 -
Mibi02g1099 438 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 136 327 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1099 Mibi-ChrMibi02 10892665 10893981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1099 1 429 C3H Transcription Factor Family AT3G58030 53.524 1.01e-136 397
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1099 02 10892665 10893981 Mibi02g1099 02 10892665 10893981 ECH