Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1083 ATGGGAATAACTTAGCAGCTTGGCTCCCTGCGTTGTCGAAAGTCGAAACCCTCTTCTAGGGCTAGGGTTTCCCATCTTAATCTCTCACTACTTCTACGATCCTCTTTATCTCTTTGTATTCTGGTTGAGGTTATTCTTATTCGGATCTTGATTTACTGCCTCCTTAAAATGGATGCTCGCAAGAGAGGGAGGCCTGGCGCTGCCATCAACGTTAACGGTGGCTTCAAGAAGAACAAGCAAGAATTGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCTTGTACCAAGTTTTTCAGCACTGCTGGCTGCCCTTTTGGAGAGGGTTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAATGCTGTTGCTCAGATGATGAATTTAGCCCCTGTAACTTCTGCTCCTAGAAATGTTGCAGCCCCTCCACCGGTTCATAATGGCTCCACTCCTGGGGTCAAAACTCGCATATGCAATAAATATAATTCTGCAGAAGGCTGCAAATTTGGTGATAAGTGTCATTTTGCTCATGGCGAGTGGGAACTTGGAAAGTCAATGTCTTCAGTAGAAGATCACCGTGCCATGGGACCTATTGGAGGCCGTATTGCTCACAACCGTATGGAGCCCCCACCTGATCCTGTTGCCAGTTTTGGTGCCAATGCCACTGCCAAGATCAGTGTAGAAGCATCCTTAGCTGGAGCAATCATTGGGAAGGGTGGGGTAAACTCCAAGCAAATCTGCCGTCAAACAGGAGCCAAACTATCAATTCGGGATCATGAGTCAGATCCAAATCTCAGAAACATTGAACTTGAGGGAAGCTTTGAACAAATTAAGGAAGCGAGTAACATGGTGAAAGAGTTGCTTGCAACCATCTCAATGTCTGCACCGCCTAATAAAATTCACGGTGCTCCTGGTGCCCCAGCCCCAGCTGGAAGCAACTATAAGACCAAGCTGTGCGAGAACTTTGCCAAGGGATCTTGTACTTTCGGAGAGAGATGTCACTTTGCTCATGGGGCTGCTGAACTGCGTAAAACGATAGTATAA 1047 0.468 MGITXQLGSLRCRKSKPSSRARVSHLNLSLLLRSSLSLCILVEVILIRILIYCLLKMDARKRGRPGAAINVNGGFKKNKQELESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLAPVTSAPRNVAAPPPVHNGSTPGVKTRICNKYNSAEGCKFGDKCHFAHGEWELGKSMSSVEDHRAMGPIGGRIAHNRMEPPPDPVASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIKEASNMVKELLATISMSAPPNKIHGAPGAPAPAGSNYKTKLCENFAKGSCTFGERCHFAHGAAELRKTIV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1083 348 Pfam KH domain 224 287 IPR004088 GO:0003723
Mibi02g1083 348 FunFam Zinc finger CCCH domain-containing protein 309 345 - -
Mibi02g1083 348 ProSiteProfiles Zinc finger C3H1-type profile. 314 341 IPR000571 GO:0046872
Mibi02g1083 348 SUPERFAMILY CCCH zinc finger 313 345 IPR036855 GO:0046872
Mibi02g1083 348 Gene3D K Homology domain, type 1 218 313 IPR036612 GO:0003723
Mibi02g1083 348 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Mibi02g1083 348 ProSiteProfiles Zinc finger C3H1-type profile. 153 181 IPR000571 GO:0046872
Mibi02g1083 348 Gene3D - 148 185 - -
Mibi02g1083 348 Gene3D - 314 346 - -
Mibi02g1083 348 ProSiteProfiles Type-1 KH domain profile. 221 285 - -
Mibi02g1083 348 MobiDBLite consensus disorder prediction 192 216 - -
Mibi02g1083 348 FunFam Zinc finger CCCH domain-containing protein 148 185 - -
Mibi02g1083 348 CDD KH-I 223 286 - -
Mibi02g1083 348 SMART kh_6 220 290 IPR004087 GO:0003676
Mibi02g1083 348 Pfam RNA-binding, Nab2-type zinc finger 95 115 - -
Mibi02g1083 348 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 180 IPR000571 GO:0046872
Mibi02g1083 348 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 339 IPR000571 GO:0046872
Mibi02g1083 348 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 210 291 IPR036612 GO:0003723
Mibi02g1083 348 PANTHER CCCH ZINC FINGER/TIS11-RELATED 67 207 IPR045877 GO:0003729
Mibi02g1083 348 SMART c3hfinal6 153 180 IPR000571 GO:0046872
Mibi02g1083 348 SMART c3hfinal6 314 340 IPR000571 GO:0046872
Mibi02g1083 348 SMART c3hfinal6 90 117 IPR000571 GO:0046872
Mibi02g1083 348 SUPERFAMILY CCCH zinc finger 154 184 IPR036855 GO:0046872
Mibi02g1083 348 SUPERFAMILY CCCH zinc finger 91 116 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1083 Mibi-ChrMibi02 10735683 10740541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1083 91 185 C3H Transcription Factor Family AT1G68200 27.368 2.64e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi02g1083 KH_1 3.2e-12 CL0007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1083 02 10735683 10740541 Mibi06g1960 06 40159113 40161926 CCT