Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1077 ATGAACCCTAGCTTTGAACAAAACGAGCTGCGTGGGTTTGATATTCCAGAGGAAGGAGGAACCGAAGACGACGACAACGAGATGGACGATTTCAAAAAGAGAAAGCTCGAAGATGCCGCCGACAACGGCGATTCTTCTTCTAAGGATGAACTTCGCTTTCTCCTTGACCCTCTTTCCAAACCTCAGCTTGTTGATCTTCTCGCTAAACTAGGGTCCCAATATCCTTCCATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTTCAGAAACATTGTGTGCTGCATTTCTAGAACATGGAGAAATTGAGGAAGGGGCTGTTATCTATGATAAAACAACAGGAAAATCCCGTGGTTATGGCTTCATCACTTACAAACACATGGAATCAACTCATCGTGCATTAAGAGCACCAAGCCAGTTAATTGATGGCAGGTTGGCTGTCTGTAATCTGGCTTGTGAGGGCTTAAGTGGAACAAGTAGTTCCCCTGATCTTTCCCTGAGGAAGTTGTACATTGGAAGCTTATCACCTGAAGTCAGTAGTGAAATGTTGCTTAGCTTTTTTGGGAGGCATGGTGAAATAGAGGAAGGGTCAGTTGCATACGACAAGGACTCAAACGAATCTCGTGGTTTTGGCTTTGTTACATACAAGACTGCAGAAGCTGCAAAGAAGGCCATAGATGATCCAGAAAAGACTCTTGGGGGGAGGAATATAATTGTAAAATATGCGGATTCGCACAAGGGGAAAACAGGGCAGCCATCAGTGGTTCCAATGGCAGCCTTACCTATGGCTCCTGGATATGTGCAGATGCAGCATGTGAAAACACATATTAGCAATCCTCAAGTTGGCTACAATTACCCTCAGGCCGTAGGATCATACCCTGCACCTTCCTATCCAAGTCCTCCAACCTCAGCCGCACCTTATCCTTCAGTTTCTGGGAAGTCAACTCCGCCTGTTGGAATGAACAACTACCCATATTACTATCCTAAGCAATAA 1041 0.4496 MNPSFEQNELRGFDIPEEGGTEDDDNEMDDFKKRKLEDAADNGDSSSKDELRFLLDPLSKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTTSETLCAAFLEHGEIEEGAVIYDKTTGKSRGYGFITYKHMESTHRALRAPSQLIDGRLAVCNLACEGLSGTSSSPDLSLRKLYIGSLSPEVSSEMLLSFFGRHGEIEEGSVAYDKDSNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRNIIVKYADSHKGKTGQPSVVPMAALPMAPGYVQMQHVKTHISNPQVGYNYPQAVGSYPAPSYPSPPTSAAPYPSVSGKSTPPVGMNNYPYYYPKQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1077 346 MobiDBLite consensus disorder prediction 308 333 - -
Mibi02g1077 346 CDD RRM_RBM24_RBM38_like 92 167 - -
Mibi02g1077 346 Gene3D - 13 169 IPR012677 -
Mibi02g1077 346 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 160 IPR000504 GO:0003723
Mibi02g1077 346 MobiDBLite consensus disorder prediction 26 48 - -
Mibi02g1077 346 SMART rrm1_1 184 256 IPR000504 GO:0003723
Mibi02g1077 346 SMART rrm1_1 93 165 IPR000504 GO:0003723
Mibi02g1077 346 FunFam UBP1-associated protein 2C 170 268 - -
Mibi02g1077 346 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 160 IPR000504 GO:0003723
Mibi02g1077 346 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 253 IPR000504 GO:0003723
Mibi02g1077 346 SUPERFAMILY RNA-binding domain, RBD 81 169 IPR035979 GO:0003676
Mibi02g1077 346 Gene3D - 170 273 IPR012677 -
Mibi02g1077 346 MobiDBLite consensus disorder prediction 1 48 - -
Mibi02g1077 346 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 76 160 - -
Mibi02g1077 346 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
Mibi02g1077 346 SUPERFAMILY RNA-binding domain, RBD 178 266 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1077 Mibi-ChrMibi02 10636892 10641999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1077 175 267 C2H2 Transcription Factor Family AT2G19380 34.409 1.72e-13 69.7