Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1044 ATGGCTGACCCTTACTCCCATCTTTTCTCCTCTCCTCCTACTCCTCCTTTTTTCCATCAATTCAATCCTTTCCCTTCCTCCCACCCTTCCTCTTTCCACAACTTCCTCAGCCACCCTTCCGCCCCCTCCTCCTCCTCCTCCGCCTCCTTTTTCCACCACCACCACCACCATGCCCCACCGCCGTCACCGCCGTCTCCTCCTCTCAGAGAAGCCCTCCCTCTTCTCAGCCTCAGCCCCTCAACAAGGCAAGACCACCATCACCATGACTTAGATACTAATCATAAACCAAAAGAGGAAGAACAAGAAGAGGATGATGATGAAGTGGATGAGGCTGCCACCACCACCACCGTGACTGTTGCACTCCACATAGGCTTGCCCAGCCCTTCTCCTTCCGAGTTGGCTTCTCTCCTCTCAAATCATAAACAACAACAACAAGAAGATGATCATGATGTTGAAGATGGAGGAGATCACCATCATCATGATGGGGAGGATTATTGTTCATCGGGCGGATTGATGATGAACATCAATAAGCTGAACAAGGGGCAGTACTGGATCCCTACTCCCTCTCAGATCCTCATCGGCCCCACTCAGTTCTCTTGCCCTGTCTGCTTCAAGACCTTCAACCGCTACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCACTGAGAGGAACACAACCAACGGGAATGCTAAGGCTTCCATGTTATTGTTGTGCACCAGGTTGCAGAAACAACATAGACCATCCAAGAGCAAAGCCACTTAAGGATTTTAGAACACTACAAACTCATTACAAGAGGAAGCATGGCATCAAACCCTTCATGTGCAGGAAATGTGGTAAAGCTTTTGCTGTTAGAGGCGATTGGAGAACCCACGAGAAGAATTGCGGCAAACTCTGGTATTGTATCTGTGGCTCTGATTTCAAACACAAAAGGTCTCTTAAGGATCATATCAAAGCCTTTGGGGCTGGCCATGCTGCTTATGGCATCGATGGTTTTGAAGAAGAAGATGACCCTGCCTCTGAAGTTGAGCAAGATAATGAGTCCACCCAGTAA 1080 0.488 MADPYSHLFSSPPTPPFFHQFNPFPSSHPSSFHNFLSHPSAPSSSSSASFFHHHHHHAPPPSPPSPPLREALPLLSLSPSTRQDHHHHDLDTNHKPKEEEQEEDDDEVDEAATTTTVTVALHIGLPSPSPSELASLLSNHKQQQQEDDHDVEDGGDHHHHDGEDYCSSGGLMMNINKLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGAGHAAYGIDGFEEEDDPASEVEQDNESTQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1044 359 MobiDBLite consensus disorder prediction 123 165 - -
Mibi02g1044 359 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Mibi02g1044 359 Gene3D Classic Zinc Finger 260 335 - -
Mibi02g1044 359 FunFam Zinc finger protein WIP2 251 333 - -
Mibi02g1044 359 SUPERFAMILY beta-beta-alpha zinc fingers 264 302 IPR036236 -
Mibi02g1044 359 MobiDBLite consensus disorder prediction 36 111 - -
Mibi02g1044 359 SMART c2h2final6 198 220 IPR013087 -
Mibi02g1044 359 SMART c2h2final6 282 302 IPR013087 -
Mibi02g1044 359 MobiDBLite consensus disorder prediction 81 99 - -
Mibi02g1044 359 FunFam zinc finger protein WIP2-like 197 220 - -
Mibi02g1044 359 Gene3D Classic Zinc Finger 197 220 - -
Mibi02g1044 359 MobiDBLite consensus disorder prediction 142 165 - -
Mibi02g1044 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 282 302 IPR013087 -
Mibi02g1044 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 225 IPR013087 -
Mibi02g1044 359 PANTHER ZINC FINGER PROTEIN WIP2 34 356 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1044 Mibi-ChrMibi02 10320615 10322979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1044 1 359 C2H2 Transcription Factor Family AT3G57670 62.821 3.47e-144 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi02g1044 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1044 02 10320615 10322979 Mibi06g1921 06 39702310 39704583 CCT
Mibi02g1044 02 10320615 10322979 Mibi02g1044 02 10320615 10322979 ECH