Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1035 ATGAATCACTTGACTATTGATACTGAAGATGATTTTGCAAGCTTGCTTGAGCTTGCAGCTAATAATGACGTTGAGGGTTTTGAACGACTGATTGAGCGTGATCCACCCTGTGTTGATGAGGTTGGACTATGGTATGGTCGCAGAAAGGGTTCAAAACTAATGGTCAATGAGCAGAGAACCCCTTTGATGGTTGCTGCCACTTATGGTAGCATTGATGTCATGAAGATGATTTTATCACTATCCAATGTCAACATAAATCGTCCTTGTGGCCTTGACAAGAGCACCACACTTCATTGCGCTGCATCTGGTGGAGCTGTTAATGCGGTTGATGCTGTAAAACTGCTATTATCAGCAGGTGCTGATCCAAGGTCCGTGGATGCCAATGGTCACCGTCCAGTTGACGTTATTGTTGTTCCTCCCAAGCTTGATCATGTCAAAAACAGTCTTGAAGAACTTCTTCAAACTGATGACTCCATGGCGGGGTTTAATCTTAGGGTTAACACAGCCACATCAAAAGCTGAATCTCCACCTTTATCAACTTCACCAGAGAATGAGTCTCCATCTTATGCACCAGATATTCACTTGAAGTCAAAGTCAGATGACGTACCTGTTTCCCATGCATTGGAGAAGAAAGAATACCCCATTGATTCATCTCTTCCGGACATTAAGAATGGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGATTCGGCCTTGTTCACGTGCTTATTCCCATGATTGGACTGAATGTCCCTTTGTCCATCCGGGAGAAAATGCCCGAAGAAGGGACCCGAGGAAGTTCCACTACAGCTGTGTCCCTTGTCCAGATTTTCGGAAGGGCGCTTGCCGACGTGGTGATATGTGTGAGTATGCACATGGAGTTTTTGAGTGTTGGCTGCATCCAGCCCAATATCGAACCCGTCTTTGCAAGGATGGGACAGATTGCTCTAGAAGAGTTTGTTTCTTTGCCCATACTGCTGAGGAGCTTCGGCCTTTATATGTCTCAACTGGTTCTGCTGTTCCCTCTCCTCGTTCAGGCACATCTGCCATGGATTTTGCTGCAGCTATAAGCCTGTTGCCTGGCTCCCCTTCCTCTATGTCTGTCATTTCCCCATCACCATTCACTCCGCCTATGTCTCCATCTGCCAGTGGCATGTCACACTCTTCCGCTGCTTGGTCACAAGCCAATGTCCCATCTTTGCATTTTCCTGGGAGTAATCTTAATTGCAGTCATTTGAGATCTTCACATAACGCTAGAGATATTCCTGGGGAAGACTTGGATTTGTTGCCAGAATATGAAATTCAGCAACAGCAGCTCCTTAACGAGTTCTCCGCAGCTGCTGTTGCTGGTTCTTCAATCAATTCTTGGTCCAAATGGGGTTCCCCCAACAGTAAGTTGGATTGGGCTCTTGGGACCGATGAATTGGGTAAATTCCATAGATCCTCTTCATTTGAGCTTAGGAACAATGGCGAGGGGCCTGACATATCATGGGTGCAGTCTTTAGTCAAGGAATCTCCAGCTGAGATTAAAGAGCCATCCACTAGTGTCCCAGGCATGGAAGTGGCGGGAACTTCTGGTGCAGAATCAAATATTAGCGCACAGATTGAATCTGTTGATCATGCTTTGTTGGGGGCATGGCTTGAACAAATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 1692 0.458 MNHLTIDTEDDFASLLELAANNDVEGFERLIERDPPCVDEVGLWYGRRKGSKLMVNEQRTPLMVAATYGSIDVMKMILSLSNVNINRPCGLDKSTTLHCAASGGAVNAVDAVKLLLSAGADPRSVDANGHRPVDVIVVPPKLDHVKNSLEELLQTDDSMAGFNLRVNTATSKAESPPLSTSPENESPSYAPDIHLKSKSDDVPVSHALEKKEYPIDSSLPDIKNGIYSTDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTDCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSGTSAMDFAAAISLLPGSPSSMSVISPSPFTPPMSPSASGMSHSSAAWSQANVPSLHFPGSNLNCSHLRSSHNARDIPGEDLDLLPEYEIQQQQLLNEFSAAAVAGSSINSWSKWGSPNSKLDWALGTDELGKFHRSSSFELRNNGEGPDISWVQSLVKESPAEIKEPSTSVPGMEVAGTSGAESNISAQIESVDHALLGAWLEQMQLDHLVAQQN 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1035 563 Gene3D - 5 144 IPR036770 -
Mibi02g1035 563 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Mibi02g1035 563 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Mibi02g1035 563 Gene3D - 272 334 - -
Mibi02g1035 563 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Mibi02g1035 563 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Mibi02g1035 563 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Mibi02g1035 563 PANTHER UNKEMPT FAMILY MEMBER 17 508 IPR045234 -
Mibi02g1035 563 Pfam Ankyrin repeats (3 copies) 21 124 IPR002110 GO:0005515
Mibi02g1035 563 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Mibi02g1035 563 SUPERFAMILY Ankyrin repeat 15 137 IPR036770 -
Mibi02g1035 563 SMART ANK_2a 92 124 IPR002110 GO:0005515
Mibi02g1035 563 SMART ANK_2a 57 87 IPR002110 GO:0005515
Mibi02g1035 563 SMART ANK_2a 10 39 IPR002110 GO:0005515
Mibi02g1035 563 MobiDBLite consensus disorder prediction 169 187 - -
Mibi02g1035 563 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Mibi02g1035 563 MobiDBLite consensus disorder prediction 169 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1035 Mibi-ChrMibi02 10208682 10210781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1035 452 556 C2H2 Transcription Factor Family AT5G12850 34.259 1.43e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi02g1035 Ank_2 3.8e-08 CL0465