Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1020 ATGGCTGAGCGTGGAGGAGAACGCGGTGGATTTGGACGTGGTTTTGGCGGCCGTGGTCGCGGAGATCGTGGCCGAGGTGGACGGCGCAGAGCTGGTGGTCGCCGTGAAGAGGAGGAGAAATGGGTCCCAGTGACAAAGCTTGGCCGTCTCGTCAAGGAAGGAAAGATCCGAAGCCTTGAACAGATCTACCTTCATTCTCTCCCAATCAAAGAACACCAAATCGTTGATCTCTTGGTAGGTCCCAGCCTTAAGGATGAAGTCATGAAGATCATGCCTGTACAGAAACAGACCAGGGCTGGCCAGAGAACTCGGTTCAAGGCATTTGTTGTCGTTGGTGATGGAAATGGACACGTTGGACTTGGCGTTAAGTGTAGCAAGGAGGTTGCCACTGCTATTCGCGGTTCTATTATATTGGCTAAGCTCTCTGTGATTCCTGTGAGGAGAGGTTATTGGGGAAACAAGATCGGGAAGCCACATACTGTACCGTGTAAGGTTACTGGTAAGTGTGGTTCGGTTACTGTGCGGATGGTTCCTGCTCCTCGTGGTGCTGGAATTGTTGCCGCTAGGGTTCCTAAGAAAGTGTTGCAGTTCGCTGGGATTGAGGATGTGTTCACTTCTTCAAGAGGATCGACTAAGACTCTTGGAAATTTTGTCAAGGCTACTTTTGACTGCTTGCTGAAAACCTATGGGTTCCTAACGCCCGAGTTCTGGAGGGAGACCCGCTTTACCAAATCTCCATTCCAAGAGTACACAGATATGTTGGCTAAACCTACTGGTAAGGCACTTATCTTGGAGGAAGAAAGAGTCGAAGCGTGA 816 0.5025 MAERGGERGGFGRGFGGRGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIVDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEYTDMLAKPTGKALILEEERVEA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1020 271 Pfam Ribosomal protein S5, C-terminal domain 167 239 IPR005324 GO:0003735|GO:0005840|GO:0006412
Mibi02g1020 271 PANTHER RIBOSOMAL S SUBUNIT 35 229 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mibi02g1020 271 SUPERFAMILY dsRNA-binding domain-like 79 148 - -
Mibi02g1020 271 TIGRFAM uS5_euk_arch: ribosomal protein uS5 36 243 IPR005711 GO:0003735|GO:0006412|GO:0015935
Mibi02g1020 271 Gene3D - 40 145 - -
Mibi02g1020 271 FunFam 40S ribosomal protein S2 146 239 - -
Mibi02g1020 271 FunFam 40S ribosomal protein S2 40 145 - -
Mibi02g1020 271 Pfam Ribosomal protein S5, N-terminal domain 83 147 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mibi02g1020 271 ProSitePatterns Ribosomal protein S5 signature. 100 132 IPR018192 -
Mibi02g1020 271 ProSiteProfiles S5 double stranded RNA-binding domain profile. 83 146 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mibi02g1020 271 MobiDBLite consensus disorder prediction 1 38 - -
Mibi02g1020 271 Gene3D - 146 238 IPR014721 -
Mibi02g1020 271 SUPERFAMILY Ribosomal protein S5 domain 2-like 159 239 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1020 Mibi-ChrMibi02 10053132 10054742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1020 37 259 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 90.135 1.05e-151 422