Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0938 ATGTCTTCGGATGAGTCCCTAAGATCTCTATCCATGGACTATCTCAACCTCCTCATAAACGGCCAGGCCTTCAGTGACGTCACCTTCAGCGTGGAGGGGCGCCTAGTTCATGCCCACCGCTGCATCCTGGCGGCCCGCAGCCTGATCTTCAGGAAATTCTTCTGCGGGCCCGACACCCCCTCCGCCCTTGACCTCGCCTCGGGCTCCCGGGCCAACCCGGCCAGCCCGTCCTCAAGGCCCGGCGTCATATCGGTCAACACGGTGGGCTATGAGGTGTTCCTGCTTGTGCTCCAGTTCTTGTACAGTGGTCAGGTCTCTATTGTGCCTCAGAAGCATGAGCCCAGGCCTAATTGCGGCGAGAGGGCCTGTTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTTGATACTCTCGATGCCGCTAGATCTTTTGGTGTTGAGCAGCTCGCATTGCTCACTCAGAAACAATTGGCGAGCATGGTAGAGAAAGCATCCATAGAAGATGTGATGAAAGTGCTGCTAGCATCAAGAAAACAAGACATGCAACAACTATGGACAACATGTTCCCACCTAGTAGCCAAATCAGGCCTCCCCCCAGAAGTGCTAGCCAAACACCTCCCCATCGACATCGTCGCCAAAATCGAAGAACTCCGCCTCAAAACCTCCCTCGCCCGCCGCCACCACCACCACCACCACCACCACCTCTCCTCCGACCTCGACGACCACAAAATCCGCCGCATGCGACGCGCCCTCGACTCCTCCGACGTCGAACTAGTCAAGCTCATGGTCATGGGAGAAGGCCTCAACCTAGACGAGGCCTTAGCCCTACACTACGCCGTAGAGAATTGCAGCCGTGAGGTCGTTAAGGCCTTGCTTGAACTCGGTGCAGCCGACGTTAACTACCCGGCGGGGCCCACCGGTAGGACCCCGCTCCACCTCGCCGCCGAGATGGTGTCCCCGGACATGGTGGCCGTCCTCCTCGACCACCACGCCGACCCTAACGTCCGAACGGTTGATGGTGTCACTCCTTTGGACATACTAAGAACCCTAACCTCGGATTTTCTGTTCAAAGGTGCTGTCCCTGGGCTTGCCCACATTGAACCAAACAAGCTAAGGCTTTGTTTGGAGCTCGTTCAATCTGCCGCTCTTGTTTTGTCACGTGAGGAAGGCAATGTGAATCCTCCTCCTTCTTCCACGGCACTTATTTATCCACCTATGAATGAGGATCATCATAATAATAGTAATAGTGGCAATAGCAATATTGCCAACCTTAATTTGGATGCCAGGCTTGTTTACCTCAATCTTGGTGCCACGTCATCCTCCCCGGTGGCGAGGTTGGACGGTGGCGATGAAGATGGCGGCGGCGGCGGCCATAATAGCCAGAACCGTCAAGGTGGATCGTGTGACCAAACAATGTACCACCATTCTCATCATGACTATAATTAA 1449 0.5542 MSSDESLRSLSMDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLIFRKFFCGPDTPSALDLASGSRANPASPSSRPGVISVNTVGYEVFLLVLQFLYSGQVSIVPQKHEPRPNCGERACWHTHCTSAVDLALDTLDAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKTSLARRHHHHHHHHLSSDLDDHKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPTGRTPLHLAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLAHIEPNKLRLCLELVQSAALVLSREEGNVNPPPSSTALIYPPMNEDHHNNSNSGNSNIANLNLDARLVYLNLGATSSSPVARLDGGDEDGGGGGHNSQNRQGGSCDQTMYHHSHHDYN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0938 482 SUPERFAMILY Ankyrin repeat 265 350 IPR036770 -
Mibi02g0938 482 Pfam Ankyrin repeats (3 copies) 255 337 IPR002110 GO:0005515
Mibi02g0938 482 Gene3D - 240 355 IPR036770 -
Mibi02g0938 482 MobiDBLite consensus disorder prediction 458 472 - -
Mibi02g0938 482 Gene3D Potassium Channel Kv1.1; Chain A 4 195 IPR011333 -
Mibi02g0938 482 SUPERFAMILY POZ domain 8 160 IPR011333 -
Mibi02g0938 482 SMART BTB_4 25 162 IPR000210 GO:0005515
Mibi02g0938 482 FunFam regulatory protein NPR5 isoform X1 4 195 - -
Mibi02g0938 482 CDD BTB_POZ_NPR_plant 8 162 - -
Mibi02g0938 482 Pfam BTB/POZ domain 16 110 IPR000210 GO:0005515
Mibi02g0938 482 ProSiteProfiles BTB domain profile. 25 109 IPR000210 GO:0005515
Mibi02g0938 482 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 477 IPR044284 GO:0099402
Mibi02g0938 482 MobiDBLite consensus disorder prediction 442 482 - -
Mibi02g0938 482 FunFam regulatory protein NPR5 isoform X2 238 355 - -
Mibi02g0938 482 ProSiteProfiles Ankyrin repeat region circular profile. 307 337 - -
Mibi02g0938 482 MobiDBLite consensus disorder prediction 390 419 - -
Mibi02g0938 482 SMART ANK_2a 272 302 IPR002110 GO:0005515
Mibi02g0938 482 SMART ANK_2a 307 336 IPR002110 GO:0005515
Mibi02g0938 482 ProSiteProfiles Ankyrin repeat profile. 307 339 IPR002110 GO:0005515
Mibi02g0938 482 Pfam Domain of unknown function (DUF3420) 197 249 IPR024228 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0938 Mibi-ChrMibi02 9241254 9243579 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mibi02g0938 BTB 2.9e-13 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g0938 02 9241254 9243579 Mibi06g1848 06 39032683 39036138 CCT
Mibi02g0938 02 9241254 9243579 Mibi02g0938 02 9241254 9243579 ECH