Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0842 ATGAGTTTTCAGCAGTTCAATAATGGTGGCCACGGTTTCCCCGGGGCCATCATGAAACAATTTCCCTCTCCTCCTCTCTCTAACACTTTTGAGGCCATGGGTCATTCCCGTGAGTTCGAGCCTAACAAATCTGAGATTGGATTTCAGATTCTGAACCCTTCCTTCATGGAGACCACAGCAAATACTGGTCAAAGCGTGGACGACGCCCATTTGTCCTTGAAGCTGAGGGAAGAAGGAGCAGCTAAGAGACCTGATGGCGGCAAAAGTGGGCACACTAAGCTCTGTTCCAGAGGCCATTGGAGGCCCTGTGAAGATGCCAAGCTCAAAGATCTTGTGACTCAGTTTGGTCCTCAAAATTGGAACTTGATCGCCGAGCGCCTTGAAGGACGATCAGGGAAGAGTTGCAGATTGAGGTGGTTTAATCAGCTGGATCCTAGGATTAACAGGAGGGCATTTTCGGAGGAAGAAGAGGAAAGACTGTTGGGTGCTCATAAGGCGTATGGAAACAAGTGGGCATTGATAGCGAGGTTGTTCCCAGGGAGGACCGATAATGCTGTGAAGAACCACTGGCACGTAATCATGGCCAGGAGGCAGAGAGAGCAGTCTCACGTTTTCAGAAGAAGGAAACCCGCCACTTCTGAAAACAGCATAGCGAAGGGATTAAAACTGAGCCTAAGCAACATTGTAGGCATGGGTGAATCGTCCAGCATGTCAAGCACCAGAGATGAGTCCGCTTCAACCTGCACTAATCTCTCCCTCACTCCCTCCTCCTCCATTAAACCCTCCCCTTTTCAACCCCAATATGGAACACTTATTGGAGGATCTGGGGAAGTGGGTTTGGAGAAGCAACCAAATAATAGTTGTGATTCGAAGTCGGAGGTATCAGTGAGTGAGTCGGTGGGAAACAAAGGCGACAGCAGGAAGAGTTTGTCATATTATGGGGAATGTGAAAACGTGGGGGATGGGAGGATGAAGAGGGCATTCATTGATTTTCTGGGGGTGGGAGCTGTTGCTTGA 1017 0.4926 MSFQQFNNGGHGFPGAIMKQFPSPPLSNTFEAMGHSREFEPNKSEIGFQILNPSFMETTANTGQSVDDAHLSLKLREEGAAKRPDGGKSGHTKLCSRGHWRPCEDAKLKDLVTQFGPQNWNLIAERLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLLGAHKAYGNKWALIARLFPGRTDNAVKNHWHVIMARRQREQSHVFRRRKPATSENSIAKGLKLSLSNIVGMGESSSMSSTRDESASTCTNLSLTPSSSIKPSPFQPQYGTLIGGSGEVGLEKQPNNSCDSKSEVSVSESVGNKGDSRKSLSYYGECENVGDGRMKRAFIDFLGVGAVA 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0842 338 Gene3D - 151 211 - -
Mibi02g0842 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 143 IPR017930 -
Mibi02g0842 338 SMART sant 148 196 IPR001005 -
Mibi02g0842 338 SMART sant 96 145 IPR001005 -
Mibi02g0842 338 ProSiteProfiles Myb-like domain profile. 97 143 IPR001005 -
Mibi02g0842 338 CDD SANT 100 141 IPR001005 -
Mibi02g0842 338 SUPERFAMILY Homeodomain-like 97 190 IPR009057 -
Mibi02g0842 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 198 IPR017930 -
Mibi02g0842 338 FunFam MYB transcription factor 97 148 - -
Mibi02g0842 338 Pfam Myb-like DNA-binding domain 97 143 IPR001005 -
Mibi02g0842 338 Pfam Myb-like DNA-binding domain 149 192 IPR001005 -
Mibi02g0842 338 MobiDBLite consensus disorder prediction 232 308 - -
Mibi02g0842 338 PANTHER MYB PROTEIN-RELATED 97 244 - -
Mibi02g0842 338 Gene3D - 97 148 - -
Mibi02g0842 338 MobiDBLite consensus disorder prediction 280 306 - -
Mibi02g0842 338 MobiDBLite consensus disorder prediction 232 269 - -
Mibi02g0842 338 CDD SANT 151 191 IPR001005 -
Mibi02g0842 338 ProSiteProfiles Myb-like domain profile. 144 194 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0842 Mibi-ChrMibi02 8152332 8153618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0842 54 336 MYB Transcription Factor Family AT5G17800 47.333 9.12e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mibi02g0842 Myb_DNA-binding 5.4e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g0842 02 8152332 8153618 Mibi02g0842 02 8152332 8153618 ECH