Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0803 ATGCAGTCGGTCTTCTCTATCGGGGGGGTTTTACAGACAAGGACGGTTCAAGTAAAGAATGTTTCAGATCTAGCTACTGAGAGAGAGATTCACGAATTTTTCTCGTTTTCTGGAGAAATCGAGCACATTGAGATCCAAAGTGAACCCGGGAAATCAAAGACAGCATACGTGACATTTAAAGATGCAAAAGCGCTTGAAATTGCTTTATTGTTGTCGGGAGCAACAATAGTAGATCAGATTGTGAGTATAACTCCATCTGAGAACTATGTACCAAAACAAGAGATGCAGGAGGTCATGGTGGTGACAAATGCTACAAATGTTGCTCTTGTTGAGGGTATTACATTAAACGTTGAGGACAAAGCAAGCCCCTCTAACAGTGGGAAAGTGTATATAGGTAGAGCACAGGATGTAGTTACTAGTATGCTCGCTAAAGGTTCAGCAATTAGACAAGATGCCTTGAATAAAGCTAAAGCATTTGATGAAAAGCATCAGTTTACTGCCAATGCGTCTGCTAAGGTTGCTTCTTTTGACAAGAGGGTTGGTCTTACAGAGAAATGGACAGTTGGCGTTTCTGTAGTTAATGAGAAGGTGAAGTATGTTGATCAGAGGCTTCATGTTTCAGATAAAACAATGGCTGCAATACTAGCAGCTGAGAGGAAGTTAAATGACACTGGATCAGCGGTCAAAACAAGCAGATATGTGACTGCTGGAACAACGTGGTTAAATGGTGCTTTTGGTAAAGTGGCAAGGGCTGGACAACTTGCGGGTACGAAGACCAGGGAAAAGTTCCATATGGCTGTATCTAACTTGACAGCGAAGGTACAGGTTGGACATGGTGGTGGAGGAATAGAGAGCCTTGGTGAGGGGTTGCAGTGTGAGATTGGGGGGAATGTGAACGAGGTTTTGCTCCGACGCGGCTGCCGAAGATGCAATTCGAAATGGACTGGGCAAATAGCTGATGGACTGCAGGGCTTGAGTTTTGTTTTTGGCAGTATTTGGGAGCATTCTGTTGGAGAAGACAATCATGGAGAATCTAGCTCCTGGAATAATAATATAGTTTATTTGAGGGATCATATAACTGCTAAGCTATTGGATTTAGCTCTCAGACCTCACACTAAATATTTTGCTAGATCGCTTATATATGCATACTTAGGGTGCAATACTGCAAGGATGGATATGATTGTTTCTCCACAAGCATTGCAGACACAGGGTCGCAAAAATTTATCTGCTAATTCACTGAAAGATGTGTGGCTTGTTGTGAGAGAAGGATCTCTAAATGATGTAGAGATAGCCTTGGCATTATTAAAGAAGAATGGAATCAATATCAATTCGAGGAACATATTTGGGCTGACCCCTCTTCATATTGCCACCTGGAGGAACAACATTCCCATTGTTAGGAGACTTCTTGCAGCTGGTGCAGACCCTGATGCTCGAGATGGAGAATCCGGATGGAGTAGCCTTCACAGGGCATTGCATTTTGGACATCTTGCCGTGGCAGGAATTCTTCTTCAGCATGGTGCCTCTATTACAATGGAGGACTATAAATCTCGAGTACCTGTAGATCTCTTATCTGGCCATGTGTGTCAGGCCTTTAGAAATGAATGTGATTCAGAGGCTGAGCAATTACAATACGCTATTTTGGGTATAGTGGCTACTGAGGTCTTTAGTTGGGGAAGTGGCACAAACTACCAGCTTGGAACTGGAAATGCACACATTCAGAAGTTGCCATGTAAAGTTGATTCACTTGGTGGTTCCTACATAAAGTTGATTTCTGCCGCAAAATTCCACAGTGTGGCTGTTACAGCTATTGGAGAAGTGTACACCTGGGGATTTGGGAGGGGGGGCCGTCTGGGTCACCCAGATTTTGACATCCATAGCGGTCAAGCTGCAGTCATCACTCCCCGGCAGGTGACTTCTGGTCTTGGTGCTCGCCGAGTGAAGGCAATTGCTGCTGCTAAGCATCATACTGTTGTTGCTACAGAAGGTGGTGAAGTGTTCACTTGGGGATCCAATAGAGAGGGACAGCTTGGCTACCCTTCTGTTGATACCCAACCCACACCCCGTAGAGTGACTACGTTACGGTCCAAAATTGTTGCTGTTGCTGCAGCAAACAAGCATACTGCTGTAGTTTCTGATTTAGGCGAAATTTTTACCTGGGGTTGCAACAGAGAGGGTCAGCTTGGTTATGGTACCTCAAACTCAGCATCTAATTACACCCCACATGTAGTCGAATACTTGAAGGGAAAGAATTTGACTGGAGTTTCTGCTGCAAAATATCATACAGTTGTATTAGGATCTGATGGAGAGGTATATACTTGGGGTCATCGCCTTGTTACTCCAAGACGTGTTGTGATTACTAGGAACTTGAAAAAAAGTGGTAGCACTCTTTTGAAGTTTCACCGCATGGAACGACTTCATGTAGTTTCCATAACTGCTGGAATGATGCATAGCACAGCTCTTACAGATGATGGTGCACTGTTCTATTGGGTCTCCTCAGATCCTGATCTTAAATGCCAACAGCTATATGCTATGTCTGGAAGAAATATGGTGAGTATATCTGCTGGAAAGTACTGGACTGCGGCTGTTACAACTACTGGTGATGTTTACATGTGGGATGGGAAGAAAGGTAAGGAAAATCCACCTGTTGTGACACGGTTACATGGTGTAAAGAGGGCTACTTCAGTTTCAGTTGGTGAAACTCATTTACTGATTGTGTCTTCCGTCTATCATCCTGGCTATCCTCTTAATGTGTCGAATACTTCCCGGAAGCTCAAGCTAAATCATAGTGATGATATGGAAGAGATTACAGAAGATATTTTATCTGAGAATTTGGGATCCAATAATATGACTTACTGTATACAAAAGGATAATTTTGGGAAGAGGCTTGTACCTAGTTTAAAAAGCCTTTGTGAAAAGGTTGCGGCAGAGTGTATATTGGAGCATCGAAATGCCATTCAGTTGCTTGAGATTGCCGATTCTCTAGAAGCCAATGATTTGAAAAAATATTGTGAGGAGATTGCCATTCGCAACCTTGATTATATCTTTACAGTTTCATCACATTCTGTGGAAAGTGCTTCACTAGATATTCTGGCTAACCTTGAGACTTTGTTAGACCAGAGATCATCTGAACCATGGAGTCACCGCCGACTCCCTACTGTAACTGCTCCTTTTCCTCCCGTCATAAACAGTGAAGAGGATGATAGTGGCATGGATTTTCACAGAACTCGTGATAGACCAATGAAATTGAAGTTGGAAAAGGATCAAAGACTAGATTCGTTTCTTCAGCCTAAGGATGATCCGGATCAAGAAAACTCCAAAGTAGTTCGAGCTCTAAGGAAGAAGTTGCAGCAGATTCAGGTGCTTGAAGCTAAGCAATCTAATGGTCATCACCTTGATGACCAGCAGATTGCGAAGCTTCAGTCCAAGTCAGCTCTGGAGAGGTCACTTGCGGAGCTAGGTGTTCCTATTGAAGTTTCACAAAATAAACAGTTGTCTTCTGAGCGTTCAGAAGGGAAAGGTAATAAAAAAGGTAAACTATCAAGAAAACAGAGAAAGAGCAGCGCATCTAGTGTGGTGCAGACTGAAGTGGAATCTATTCATGCTGAAACAAAAGTAATATCAGAAACTGCACAGGACATGTTGGACATTAAAATCTTGGAGGCTTCTGAGATAAAGGTGGAAGATTCTACTTGTGAACAAACTGCAGCCGATAAAGATGCAACAGATTCAGCTCCTGTGTCCCAGAAGAAATATAATTCAGAGTTGCCAAGCAAGTGTCAGTCACTGAAAGTTTCTAAGAAGAAGGGCAAGAAAGGTGGGCTTTCGATGTTTTTGAGTGGTGCCCTTGAGGACACCCCAAAAGAGGTGGCCTCCCCTCCACCAATGCCAAGGAATGAGGGTCCTGCATGGGGTGGTGCCAAGTTTTCGAAGGGTTCTGCTTCTCTCCGTGAAATTCAGGTTGAGCAGAGCAAAATTAAGGGAAACAAACCAAGTAAGAGCAAACACCAGGATCAAGATCTTTCTGATAGTAGCAGTGGGGTGAAAATATCATTAAGTTCATTTCTTCATTCCACTCCAATACCTGTTGCTTCAAGTCAAAGTTCACGGGTGTCTGATGGAGAAAGAAGTAGCCCCTCTTGGGCTGCTTCCAGAACTCCACCTTATCCATCTCGGCCATCTTTAAGGGATATTCAAATGCAGCAGGGGAAAATGCATGAGAGTGTGTCCCATAGTCCAATGGCCAGGACAACTGGATTTGTTGTTGCTACAGGTCAGGGCTCGCCATCTGAAGTGACAGGGATGAACCGCTGGTTCAAGCCAGAGGCGGAGACGATATCCTCAATCCGGTCTATTCAGATTGAGGAAAAGGCCATGAAGGATCTCAAGCGCTTCTACAGCAGTGTTAAGGTTGTCAAAAAAACAAGTCTTGAGGGTTGA 4437 0.4366 MQSVFSIGGVLQTRTVQVKNVSDLATEREIHEFFSFSGEIEHIEIQSEPGKSKTAYVTFKDAKALEIALLLSGATIVDQIVSITPSENYVPKQEMQEVMVVTNATNVALVEGITLNVEDKASPSNSGKVYIGRAQDVVTSMLAKGSAIRQDALNKAKAFDEKHQFTANASAKVASFDKRVGLTEKWTVGVSVVNEKVKYVDQRLHVSDKTMAAILAAERKLNDTGSAVKTSRYVTAGTTWLNGAFGKVARAGQLAGTKTREKFHMAVSNLTAKVQVGHGGGGIESLGEGLQCEIGGNVNEVLLRRGCRRCNSKWTGQIADGLQGLSFVFGSIWEHSVGEDNHGESSSWNNNIVYLRDHITAKLLDLALRPHTKYFARSLIYAYLGCNTARMDMIVSPQALQTQGRKNLSANSLKDVWLVVREGSLNDVEIALALLKKNGININSRNIFGLTPLHIATWRNNIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVAGILLQHGASITMEDYKSRVPVDLLSGHVCQAFRNECDSEAEQLQYAILGIVATEVFSWGSGTNYQLGTGNAHIQKLPCKVDSLGGSYIKLISAAKFHSVAVTAIGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGARRVKAIAAAKHHTVVATEGGEVFTWGSNREGQLGYPSVDTQPTPRRVTTLRSKIVAVAAANKHTAVVSDLGEIFTWGCNREGQLGYGTSNSASNYTPHVVEYLKGKNLTGVSAAKYHTVVLGSDGEVYTWGHRLVTPRRVVITRNLKKSGSTLLKFHRMERLHVVSITAGMMHSTALTDDGALFYWVSSDPDLKCQQLYAMSGRNMVSISAGKYWTAAVTTTGDVYMWDGKKGKENPPVVTRLHGVKRATSVSVGETHLLIVSSVYHPGYPLNVSNTSRKLKLNHSDDMEEITEDILSENLGSNNMTYCIQKDNFGKRLVPSLKSLCEKVAAECILEHRNAIQLLEIADSLEANDLKKYCEEIAIRNLDYIFTVSSHSVESASLDILANLETLLDQRSSEPWSHRRLPTVTAPFPPVINSEEDDSGMDFHRTRDRPMKLKLEKDQRLDSFLQPKDDPDQENSKVVRALRKKLQQIQVLEAKQSNGHHLDDQQIAKLQSKSALERSLAELGVPIEVSQNKQLSSERSEGKGNKKGKLSRKQRKSSASSVVQTEVESIHAETKVISETAQDMLDIKILEASEIKVEDSTCEQTAADKDATDSAPVSQKKYNSELPSKCQSLKVSKKKGKKGGLSMFLSGALEDTPKEVASPPPMPRNEGPAWGGAKFSKGSASLREIQVEQSKIKGNKPSKSKHQDQDLSDSSSGVKISLSSFLHSTPIPVASSQSSRVSDGERSSPSWAASRTPPYPSRPSLRDIQMQQGKMHESVSHSPMARTTGFVVATGQGSPSEVTGMNRWFKPEAETISSIRSIQIEEKAMKDLKRFYSSVKVVKKTSLEG 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0803 1478 Gene3D - 393 531 IPR036770 -
Mibi02g0803 1478 MobiDBLite consensus disorder prediction 1327 1341 - -
Mibi02g0803 1478 SMART rrm1_1 15 84 IPR000504 GO:0003723
Mibi02g0803 1478 ProSiteProfiles Ankyrin repeat region circular profile. 482 513 - -
Mibi02g0803 1478 PANTHER BTK-BINDING PROTEIN-RELATED 391 1467 - -
Mibi02g0803 1478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 714 767 IPR000408 -
Mibi02g0803 1478 MobiDBLite consensus disorder prediction 1227 1412 - -
Mibi02g0803 1478 Gene3D - 10 99 IPR012677 -
Mibi02g0803 1478 CDD RRM_Vip1_like 16 84 IPR034360 -
Mibi02g0803 1478 ProSiteProfiles Ankyrin repeat profile. 448 480 IPR002110 GO:0005515
Mibi02g0803 1478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 604 662 IPR000408 -
Mibi02g0803 1478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 663 713 IPR000408 -
Mibi02g0803 1478 Gene3D - 540 787 IPR009091 -
Mibi02g0803 1478 ProSiteProfiles Ankyrin repeat region circular profile. 448 479 - -
Mibi02g0803 1478 PRINTS Chromosome condensation regulator RCC1 signature 606 622 IPR000408 -
Mibi02g0803 1478 PRINTS Chromosome condensation regulator RCC1 signature 716 730 IPR000408 -
Mibi02g0803 1478 PRINTS Chromosome condensation regulator RCC1 signature 663 679 IPR000408 -
Mibi02g0803 1478 PRINTS Chromosome condensation regulator RCC1 signature 700 716 IPR000408 -
Mibi02g0803 1478 PRINTS Chromosome condensation regulator RCC1 signature 553 569 IPR000408 -
Mibi02g0803 1478 PRINTS Chromosome condensation regulator RCC1 signature 813 831 IPR000408 -
Mibi02g0803 1478 MobiDBLite consensus disorder prediction 1160 1194 - -
Mibi02g0803 1478 SUPERFAMILY RCC1/BLIP-II 552 829 IPR009091 -
Mibi02g0803 1478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 552 603 IPR000408 -
Mibi02g0803 1478 Pfam Ankyrin repeats (3 copies) 428 513 IPR002110 GO:0005515
Mibi02g0803 1478 SUPERFAMILY Ankyrin repeat 425 522 IPR036770 -
Mibi02g0803 1478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Mibi02g0803 1478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 768 823 IPR000408 -
Mibi02g0803 1478 SMART ANK_2a 482 511 IPR002110 GO:0005515
Mibi02g0803 1478 SMART ANK_2a 448 477 IPR002110 GO:0005515
Mibi02g0803 1478 SMART ANK_2a 411 444 IPR002110 GO:0005515
Mibi02g0803 1478 MobiDBLite consensus disorder prediction 1342 1386 - -
Mibi02g0803 1478 SUPERFAMILY RNA-binding domain, RBD 12 93 IPR035979 GO:0003676
Mibi02g0803 1478 ProSiteProfiles Ankyrin repeat profile. 482 514 IPR002110 GO:0005515
Mibi02g0803 1478 MobiDBLite consensus disorder prediction 1086 1106 - -
Mibi02g0803 1478 Gene3D - 788 924 IPR009091 -
Mibi02g0803 1478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 88 IPR000504 GO:0003723
Mibi02g0803 1478 MobiDBLite consensus disorder prediction 1236 1260 - -
Mibi02g0803 1478 SUPERFAMILY RCC1/BLIP-II 805 913 IPR009091 -
Mibi02g0803 1478 MobiDBLite consensus disorder prediction 1394 1412 - -
Mibi02g0803 1478 Pfam Regulator of chromosome condensation (RCC1) repeat 553 600 IPR000408 -
Mibi02g0803 1478 Pfam Regulator of chromosome condensation (RCC1) repeat 714 764 IPR000408 -
Mibi02g0803 1478 Pfam Regulator of chromosome condensation (RCC1) repeat 663 710 IPR000408 -
Mibi02g0803 1478 Pfam Regulator of chromosome condensation (RCC1) repeat 604 658 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0803 Mibi-ChrMibi02 7713417 7739621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0803 421 522 Acyl Lipid Metabolism Gene Families AT5G53470 36.538 2.95e-08 55.5