LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi02g0631	ATGATCACTAAGCTGGGAGCTTTGGCCTTTTTGTTTTCGTTCTTCTTCCTCTTCGCCTTTTCACTTGGAGAAGGGCTGATCAATTGCAACAAAACATCCCCAGATGGTTCTGGCTATCGTTGCGGTAAAAATGAATCACAATGTGGAACATTTGCAGTTTTCTTCACCAATTCATATTACTCATCTCTCTTCAACTTGAGCTTTTACCTGGGGCTCCATCGTTATGTGATTGCAGATGCAAATGGGTTTTCTGCAGAAACAGAGTTTCTTCTCCATGAGCAGCCTTTATTAATACCAATAGACTGCAATTGCAAAGATGGCTTCTTTGGCGCTGAAATAACCAAAACCACCATTAAAGGTGAGAGCTTTCATGGTATTGCTCAATCTCTGGAAGGCTTAACATCTTGCATGTCTATTAGAGATAAGAATCCAGACGTGTCGTCACCTTGGGATCTCGATGATGATACCAAATTGCTGATCCCTTTAAGATGTGCATGTCCCTTATCATCTAAAGCTTCTCCAGAGCCGAAGCTTCTGATTTCTTACCCTGTGAAAGAAGGCGACACAGTTCACAATTTGGCATCAAAGTTTAATATTACCGCTGAAGCAATAATCTCCACAAATAACATATTTTCCGGAGATTTTAAACCTGAGAAGCTCACTCCCTTTACCTCTCTTCTGATCCCACTCAATGGTAAGCCTGTTCTTGGTTCTCTGGCTAAACCCAAGGAACCAAATTCTGGTAATAATAGATCAAGCAGCATTACAGTAATTACACCATCATCATCATCATCATCATCATCATCACACGGGAAGCCTAAAACGTGGAAGGCTGATTTGTACATTGGCTTAGCTGGGGTGGCAGTTGGACTTTTGTTTGCTTTTCTAGCAGCTTTTGTTGTGGTTCGATTAAGGAACGAGAAGAAAGGGAAATCAGCCAAAAGAAACAATTTGGAGCTGCAACATCTAAATATAAGCGCGAGAACCACCAGCGACAAGAAAGTTTCATTCGAGGGATCACAGTATGGGAAGATCATCGACATAACTCCTCGTAAGATGATGGAGACATACACAATTGAAGACCTTAGAAAAGCAACAGAGGATTTCAGTTCAAGCAATCTCATAGAAGGATCTGTATTTCACGGCCGTCTAGAAGGGAAGAACATGGCAATTAAACAAACACAAACAGAAACTGTGTTAAGAATCGATCTTGGGCTCTTCTACAACTCAATCCACCATCACCCCAACATTCTTAGGATGCTTGGAACGTGTTTAACAGAAGGTCCAGAATCATATCTGGTTTTCGAGTATGCCAAAAATGGGTCTTTGAAAGATTGGCTTCATGGTGGGTTGGCCATAAAGAACGAGTTCATATCATCCTGTTATTGCTTCCTCACATGGAGTCAGAGACTAAGGATCTGCCTCGACGTGGCCATGGCCCTGAAATATATGCACCACGTCATGAACCCAAGCTATGTTCACAGAAATATAAAGAGCAGGAACGTCTTTCTAGACGAAGAATTTGGTGCCAAGATAGGGAATTTTGGGATGGCATGTTGTGTTGAGAACGAAACAGAGGATCCAAAGTTCTATTCAACCAACCCTGCTTCTTGGAATCTTGGTTATCTGGCACCAGAATATGTACACCAAGGTGTGATTTCTCCGAGTACTGATATTTTTGCTTATGGGGTGGTTTTGCTGGAGATTTTGTCTGGTCAGACACCTATAAGCAGACCCAATGAGAAGGGAGAAGAAGGTCAAGGAAGCGTTTGGCTCACTGATAAAATAAAGTCTGTTTTGAAGTCAGAGAATGAGGAAGAACTGAGAGTGTGGATGGACAAGGCATTAGGCGAAAATTATTCGTTTGATGCAGCAGTAACAATGGCGAAAATTGCTAGAGCTTGTGTGGAAGAAGATTATGGTATGAGGCCAAGTGCAGGGGAAATTGTGGAGAAGCTAACCAGATTGATGGAGGAACTTCCAGAAGAAGATCACATGTTGATGTCTGAAAGCTCATGCAAGCCTCTGGTGAAAGCATTGGCAAAACCTTGGTCCTAG	2058	0.4218	MITKLGALAFLFSFFFLFAFSLGEGLINCNKTSPDGSGYRCGKNESQCGTFAVFFTNSYYSSLFNLSFYLGLHRYVIADANGFSAETEFLLHEQPLLIPIDCNCKDGFFGAEITKTTIKGESFHGIAQSLEGLTSCMSIRDKNPDVSSPWDLDDDTKLLIPLRCACPLSSKASPEPKLLISYPVKEGDTVHNLASKFNITAEAIISTNNIFSGDFKPEKLTPFTSLLIPLNGKPVLGSLAKPKEPNSGNNRSSSITVITPSSSSSSSSSHGKPKTWKADLYIGLAGVAVGLLFAFLAAFVVVRLRNEKKGKSAKRNNLELQHLNISARTTSDKKVSFEGSQYGKIIDITPRKMMETYTIEDLRKATEDFSSSNLIEGSVFHGRLEGKNMAIKQTQTETVLRIDLGLFYNSIHHHPNILRMLGTCLTEGPESYLVFEYAKNGSLKDWLHGGLAIKNEFISSCYCFLTWSQRLRICLDVAMALKYMHHVMNPSYVHRNIKSRNVFLDEEFGAKIGNFGMACCVENETEDPKFYSTNPASWNLGYLAPEYVHQGVISPSTDIFAYGVVLLEILSGQTPISRPNEKGEEGQGSVWLTDKIKSVLKSENEEELRVWMDKALGENYSFDAAVTMAKIARACVEEDYGMRPSAGEIVEKLTRLMEELPEEDHMLMSESSCKPLVKALAKPWS	685

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi02g0631	685	MobiDBLite	consensus disorder prediction	238	272	-	-
	Mibi02g0631	685	CDD	LysM	180	214	IPR018392	-
	Mibi02g0631	685	Pfam	LysM domain	182	229	IPR018392	-
	Mibi02g0631	685	SMART	LysM_2	181	229	IPR018392	-
	Mibi02g0631	685	Coils	Coil	301	321	-	-
	Mibi02g0631	685	ProSiteProfiles	LysM domain profile.	180	228	IPR018392	-
	Mibi02g0631	685	Gene3D	Phosphorylase Kinase; domain 1	345	437	-	-
	Mibi02g0631	685	SUPERFAMILY	LysM domain	180	228	IPR036779	-
	Mibi02g0631	685	Gene3D	Transferase(Phosphotransferase) domain 1	438	674	-	-
	Mibi02g0631	685	Pfam	Protein tyrosine and serine/threonine kinase	410	653	IPR001245	GO:0004672\|GO:0006468
	Mibi02g0631	685	ProSiteProfiles	Protein kinase domain profile.	331	668	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi02g0631	685	SUPERFAMILY	Protein kinase-like (PK-like)	348	653	IPR011009	-
	Mibi02g0631	685	PANTHER	LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED	22	660	-	-
	Mibi02g0631	685	FunFam	PTI1-like tyrosine-protein kinase 3	438	667	-	-
	Mibi02g0631	685	MobiDBLite	consensus disorder prediction	243	272	-	-
	Mibi02g0631	685	Gene3D	LysM domain	167	235	IPR036779	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi02g0631	Mibi-ChrMibi02	6181267	6183324	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi02g0631	38	678	LysM Receptor-like Kinase (LYKs) Gene Family	AT3G01840	39.580	3.82e-150	449

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Mibi02g0631		PK_Tyr_Ser-Thr	3.9e-31	CL0016