Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0575 ATGTCTAGATCATTGTACCTAACTAACGTATCGTTCCTCTTATCCAATTCTAGACTCATGGCCTCTGCAAGAGTTTTCTATCATTGGCTTCCATCTCCAAAATTCACAATCTTCAATAAAGCTGACACTTTCTCCCAATCACCCTCCCTACGAACATTTTCCACCTCTCGAACCCCATACCCACTTCAGTACGAGATGATTATCAATCGTCCCGTCAATTCTGTGCATGCCCATTCTCGCCGTCGACCTGTTCGACAAAATGACTCTAATGCAGAGGGCTTCCCTGACTCAGAGTCTCCTGAAGAGTCTGTTTCTCCGGAAGAGTCTGTTTCTGAATTGGGATTAGATAGCTGGGTTGATCGGAAATTGGCTTCTGAGAAAGGAGATGGCTTACCCAGTTCCCAAAATTTGGAGCTTGATAAGGCTAAGAAAAAATATTACAGAAAAAGGAGGAAGAGGATGTATGGGTCGGACTCTGATGAAGAGAATAGACGACCTGATGAGAAGTTCGTGGAACTTAAGCCTGAGGTGGTAGAGCTTCCTACATTGCACAAGAGGGAGGAGGAATTGTATTTCTACGATACTTTTGCTTACCCTTGGGAAAAGGAGAAGCATTATAAGATGGTCTATCAGCTGGAGAAGAAATATTTTCCTGACCAGTGTCTTGATAAAGCTTTCCTAGAACCGGGAGAATCAAATGCAAACGTGAATGCGGATACAAAGACTAAGGGTAAGGTGAGGGAAAAGAAGAAAGTCAGGGAAGATAGAAGGGAGAAGAAAGACGAGGTTGGTGATGAAGGAAATGATAAGAAGTTGATATTCTTCGAGGAGAAACAACAACAAGAGGAAGGAAAGGATAGTAGAGGATTGGTTAAGGAAACAAGAGAAGATTTAACCGAAAAGAAGGTCGAAGAGTTCTTTAAATATTTGAAGAAAATTCCGAATAAGGATGTTGAAGTGGGTGATGCTGAGCCGTTTCTTGCGTCAAGGAATTCTGGGCTTCCTCCTCGATGGGAAAGTCCTCATGGAACCGTTGTTTTGGTGAATAAACCCAAAGGTTGGACTTCATTTACAGTTTGTGGGAAGCTACGTCGCTTAGTCAAAGTGAAGAAGGTAGGTCATGCTGGAACTCTTGACCCAATGGCTACGGGTTTATTGATTGTTTGTGTTGGTAAAGCAACAAAAATAGTGGACAGATATCAAGGGATGATTAAGGGCTATAGTGGGGTTTTCCGCCTTGGGGAGGCCACTTCAACATGGGATGCTGATTCACCGGTCATTCTGCGTGAGCCGTGGGAGCATATCAAAGATGAGGACATAAAGAGAACTGCAGCATCCTTTTGTGGGGAGATTTGGCAAGTTCCCCCGATGTTCTCTGCCATTAAAGTTGGAGGCGAGAAGCTGTACGAGAAAGCAAGGAGAGGAGAGAGCATTGAACTTTCACCTAGACGAATATCAATTTTCCAGTTTGACATAGAGCGTAGTTTGGATGATAGACAAAATTTGATTTTTAGGGTAACATGTTCCAAAGGGACATATATTCGGTCACTATGTGCAGATTTTGGAAAAGCTCTTGGCAGTTGTGCCCATTTAACGGCTCTCCGGAGAGATTCAATAGGAGAATATTCAGCAGATGATGCTTGGGACTTTACAGAACTGGAAGAGGCTATTTCCAAAAATTATTTCTAA 1689 0.4292 MSRSLYLTNVSFLLSNSRLMASARVFYHWLPSPKFTIFNKADTFSQSPSLRTFSTSRTPYPLQYEMIINRPVNSVHAHSRRRPVRQNDSNAEGFPDSESPEESVSPEESVSELGLDSWVDRKLASEKGDGLPSSQNLELDKAKKKYYRKRRKRMYGSDSDEENRRPDEKFVELKPEVVELPTLHKREEELYFYDTFAYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLEPGESNANVNADTKTKGKVREKKKVREDRREKKDEVGDEGNDKKLIFFEEKQQQEEGKDSRGLVKETREDLTEKKVEEFFKYLKKIPNKDVEVGDAEPFLASRNSGLPPRWESPHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKIVDRYQGMIKGYSGVFRLGEATSTWDADSPVILREPWEHIKDEDIKRTAASFCGEIWQVPPMFSAIKVGGEKLYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGEYSADDAWDFTELEEAISKNYF 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0575 562 Pfam TruB family pseudouridylate synthase (N terminal domain) 364 514 IPR002501 GO:0006396
Mibi02g0575 562 MobiDBLite consensus disorder prediction 75 113 - -
Mibi02g0575 562 SUPERFAMILY Pseudouridine synthase 344 557 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mibi02g0575 562 MobiDBLite consensus disorder prediction 241 265 - -
Mibi02g0575 562 FunFam tRNA pseudouridine synthase B 339 561 - -
Mibi02g0575 562 Hamap tRNA pseudouridine synthase B [truB]. 342 562 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mibi02g0575 562 TIGRFAM TruB: tRNA pseudouridine(55) synthase 344 553 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mibi02g0575 562 MobiDBLite consensus disorder prediction 231 265 - -
Mibi02g0575 562 CDD PseudoU_synth_EcTruB 345 556 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mibi02g0575 562 Gene3D Pseudouridine synthase 337 561 - -
Mibi02g0575 562 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 215 560 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mibi02g0575 562 Pfam tRNA pseudouridylate synthase B C-terminal domain 515 558 IPR032819 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0575 Mibi-ChrMibi02 5662652 5666218 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0575 310 536 NAC Transcription Factor Family AT3G57150 31.718 9.18e-21 94.0