Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0530 ATGAATACTCGTGACCTTCCCTCTCTCACCGATCCACTTTCCCTCTCCCCCGATCCCCTTCTTCCCATTAGAGTTCCTCCTTCTTCTTCGGAGATTCTACGACTCCTTCCTGCTTCCTCAACGATTCTCAACTCACTTGTCAGGTTGGTTTGTCAAGGCTATACTGCCAGTTCCCTTGCAATGGCTGCTACTGCAACGGCCTCTTCAGTGGGTCCAAGATACGCACCGCATGACCCAACACTTCCTAAACCGTGGCGGGGACTTGTTGACGGTAAGACAGGTTATCTCTACTTTTGGAATCCTGAGACTAATGTCACCCAATATGAGAGGCCTACAAACTCAGCTTCCCTGCCAAAGCCTTCTTCAGTGCCCAGTTCTTCTGTCCAGGTCCAACAGTCACCCCAAGGACCACGCCGGGACCACAGTCCTGATTTTAATGATAGGTATGGTAGAAGCAACGTTGGTGGATCAAATTCTGAAGCTGGATCTCGGAATCATCAGAATCCAAAAGGTGGTGGGAGTCTTAATTCTCATAATGGTCCAAATGGAATGCACATGACCGGAAATGTTAGCTCGTCTGTCAAAAGTCATGGATCATCAGATGCAGAAGTTGGATTAACTCCAGATTCTTATCGACGCCGTCATGAAATTACTGTGTCTGGGGATAATGTTCCTCCGCCTTTCACATCCTTTGGCTCTACTGGTTTTCCATCAGAGATTCTCAGAGAGGTACACAATGCTGGGTTCTCCGCCCCAACACCGATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCCAAAACAGGTTCAGGGAAAACTCTGGGATATTTAATTCCGGGGTTCATCCATCTCAAACGTGTTGGCAATGACTCAAGATTGGGCCCCACTGTATTGGTACTGTCACCAACAAGGGAGCTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGCGAAGTCATCCAGAATTTCTTGTGCATGTTTATATGGGGGAGCACCAAAGGGTCCTCAATTGAGAGACATTGACCGAGGAGCAGATATTGTGGTTGCCACTCCTGGCCGCTTGAATGATATCCTTGAGATGAGGAGGATTAGTCTTCATCAGGTGTCTTACCTTGTACTAGATGAGGCTGACCGAATGCTAGATATGGGTTTTGAACCTCAAATCAGGAAGATTGTGAAGGAGGTGCCTGCAAGGCGGCAAACCCTCATGTTCACTGCGACATGGCCTAAGGAGGTTCGGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTTCAGGTCAACATTGGCAATGTTGATGAGCTTGTTGCTAACAAGTCCATTACACAGCATATAGAAGTATTGGCACCAATGGAGAAACACAGACGATTGGAGCAAATATTGCGGTCACAAGATTCAGGGTCAAAAATAATTGTTTTTTGTTCTACTAAGAAGATGTGTGATCAGCTTGCTCGTAATCTCACTCGCCAGTTTGGGGCTGCTGCCATTCATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAACCAATTTCGAACTGGGAGATCTCCTGTGCTTGTAGCAACAGACGTTGCAGCTCGAGGACTGGACATCAAAGATATTAGGGTTGTTGTCAATTATGACTTCCCTACTGGTGTGGAGGATTATGTTCATAGGATTGGAAGGACAGGGAGGGCAGGAGCCACTGGCTTGGCATATACGTTTTTTGGAGACCAGGATGCTAAACATTCTTCAGATCTCATAAAAATCTTGGAAGGTGCAAATCAACGAGTCCCACCAGAACTTCGTGACATGGCATCACGTGGTGGTGGTGGGATGAACAGATCTAGGCGATGGGGTTCTGGTGGTCATGGAGGACGCAGTGATTCTGGATATGGAGGACGGGGTAACGATTCTGGTTATGGTGGAAGGGGTGGGTGGGGAGTCACTCCTGGTGGTGGCAGGGGTGGAGGCCGTGGGTTTGACAATGATTTGCAGAGGAATGATCGTGCTTACCATGGACAAGATGTGGATACCCATGAGAAGTATGATAAAGGAAGAAGTGGTAGCAGGAGCCCTGATGGGAGTAGGAACTTCTACCGTGATCGTAGTCGCAGTCGAAGTCCCAACAGGCCTGAAAGGGCTGCACCACCTTCTCAAGGCTTTAGTTTTCACCAGGCAATGATGCAACGTAAAGGGGCTGGTGATCATGACAAGAGCTTTGATCAAAATAGAAACCGAAGTCGCAGCCCTGTTAAGCATGATAGGGTACCATCTGGCCGGGAACGTTCCCCAGTTTATAGTTTTCATGAAATGATGATAAAACGTGGTCAATCAAAACACACATTTAGTACTCACCAGACCAGTTCACCATCGCCTCCTCGGGGCGGTGTCTCAGACCAGTTGGATAATGGAAGGTATGGTGGGCCTAATCCTTCCTACCTCGGGGAAGAGGAGGAAGGGATGATTCCTCAGGATGATGGTGCTTATGGGGTTGCGGATTAG 2508 0.4805 MNTRDLPSLTDPLSLSPDPLLPIRVPPSSSEILRLLPASSTILNSLVRLVCQGYTASSLAMAATATASSVGPRYAPHDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTNSASLPKPSSVPSSSVQVQQSPQGPRRDHSPDFNDRYGRSNVGGSNSEAGSRNHQNPKGGGSLNSHNGPNGMHMTGNVSSSVKSHGSSDAEVGLTPDSYRRRHEITVSGDNVPPPFTSFGSTGFPSEILREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRVGNDSRLGPTVLVLSPTRELATQIQDEAVKFAKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAPMEKHRRLEQILRSQDSGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHSSDLIKILEGANQRVPPELRDMASRGGGGMNRSRRWGSGGHGGRSDSGYGGRGNDSGYGGRGGWGVTPGGGRGGGRGFDNDLQRNDRAYHGQDVDTHEKYDKGRSGSRSPDGSRNFYRDRSRSRSPNRPERAAPPSQGFSFHQAMMQRKGAGDHDKSFDQNRNRSRSPVKHDRVPSGRERSPVYSFHEMMIKRGQSKHTFSTHQTSSPSPPRGGVSDQLDNGRYGGPNPSYLGEEEEGMIPQDDGAYGVAD 835
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0530 835 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 380 388 IPR000629 -
Mibi02g0530 835 Pfam Helicase conserved C-terminal domain 460 568 IPR001650 -
Mibi02g0530 835 MobiDBLite consensus disorder prediction 602 835 - -
Mibi02g0530 835 Gene3D - 207 438 IPR027417 -
Mibi02g0530 835 MobiDBLite consensus disorder prediction 109 139 - -
Mibi02g0530 835 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 192 607 - -
Mibi02g0530 835 MobiDBLite consensus disorder prediction 732 762 - -
Mibi02g0530 835 SMART helicmild6 488 568 IPR001650 -
Mibi02g0530 835 CDD WW 82 112 IPR001202 GO:0005515
Mibi02g0530 835 Pfam DEAD/DEAH box helicase 253 423 IPR011545 GO:0003676|GO:0005524
Mibi02g0530 835 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 229 257 IPR014014 GO:0003724
Mibi02g0530 835 MobiDBLite consensus disorder prediction 663 711 - -
Mibi02g0530 835 SUPERFAMILY WW domain 73 113 IPR036020 GO:0005515
Mibi02g0530 835 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 260 434 IPR014001 -
Mibi02g0530 835 SMART ww_5 80 113 IPR001202 GO:0005515
Mibi02g0530 835 FunFam ATP-dependent RNA helicase RhlB 438 610 - -
Mibi02g0530 835 ProSiteProfiles WW/rsp5/WWP domain profile. 79 113 IPR001202 GO:0005515
Mibi02g0530 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 583 IPR027417 -
Mibi02g0530 835 ProSitePatterns WW/rsp5/WWP domain signature. 85 111 IPR001202 GO:0005515
Mibi02g0530 835 FunFam probable ATP-dependent RNA helicase DDX17 199 437 - -
Mibi02g0530 835 CDD SF2_C_DEAD 448 577 - -
Mibi02g0530 835 Gene3D - 439 610 IPR027417 -
Mibi02g0530 835 SMART ultradead3 248 451 IPR014001 -
Mibi02g0530 835 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 607 IPR001650 -
Mibi02g0530 835 MobiDBLite consensus disorder prediction 151 200 - -
Mibi02g0530 835 MobiDBLite consensus disorder prediction 109 206 - -
Mibi02g0530 835 MobiDBLite consensus disorder prediction 779 798 - -
Mibi02g0530 835 Gene3D - 76 122 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mibi02g0530 Mibi-ChrMibi02 5163305 5169440 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0530 227 606 Eukaryotic Initiation Factors Gene Family AT3G19760 33.943 1.61e-65 223