Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mibi02g0530 | ATGAATACTCGTGACCTTCCCTCTCTCACCGATCCACTTTCCCTCTCCCCCGATCCCCTTCTTCCCATTAGAGTTCCTCCTTCTTCTTCGGAGATTCTACGACTCCTTCCTGCTTCCTCAACGATTCTCAACTCACTTGTCAGGTTGGTTTGTCAAGGCTATACTGCCAGTTCCCTTGCAATGGCTGCTACTGCAACGGCCTCTTCAGTGGGTCCAAGATACGCACCGCATGACCCAACACTTCCTAAACCGTGGCGGGGACTTGTTGACGGTAAGACAGGTTATCTCTACTTTTGGAATCCTGAGACTAATGTCACCCAATATGAGAGGCCTACAAACTCAGCTTCCCTGCCAAAGCCTTCTTCAGTGCCCAGTTCTTCTGTCCAGGTCCAACAGTCACCCCAAGGACCACGCCGGGACCACAGTCCTGATTTTAATGATAGGTATGGTAGAAGCAACGTTGGTGGATCAAATTCTGAAGCTGGATCTCGGAATCATCAGAATCCAAAAGGTGGTGGGAGTCTTAATTCTCATAATGGTCCAAATGGAATGCACATGACCGGAAATGTTAGCTCGTCTGTCAAAAGTCATGGATCATCAGATGCAGAAGTTGGATTAACTCCAGATTCTTATCGACGCCGTCATGAAATTACTGTGTCTGGGGATAATGTTCCTCCGCCTTTCACATCCTTTGGCTCTACTGGTTTTCCATCAGAGATTCTCAGAGAGGTACACAATGCTGGGTTCTCCGCCCCAACACCGATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCCAAAACAGGTTCAGGGAAAACTCTGGGATATTTAATTCCGGGGTTCATCCATCTCAAACGTGTTGGCAATGACTCAAGATTGGGCCCCACTGTATTGGTACTGTCACCAACAAGGGAGCTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGCGAAGTCATCCAGAATTTCTTGTGCATGTTTATATGGGGGAGCACCAAAGGGTCCTCAATTGAGAGACATTGACCGAGGAGCAGATATTGTGGTTGCCACTCCTGGCCGCTTGAATGATATCCTTGAGATGAGGAGGATTAGTCTTCATCAGGTGTCTTACCTTGTACTAGATGAGGCTGACCGAATGCTAGATATGGGTTTTGAACCTCAAATCAGGAAGATTGTGAAGGAGGTGCCTGCAAGGCGGCAAACCCTCATGTTCACTGCGACATGGCCTAAGGAGGTTCGGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTTCAGGTCAACATTGGCAATGTTGATGAGCTTGTTGCTAACAAGTCCATTACACAGCATATAGAAGTATTGGCACCAATGGAGAAACACAGACGATTGGAGCAAATATTGCGGTCACAAGATTCAGGGTCAAAAATAATTGTTTTTTGTTCTACTAAGAAGATGTGTGATCAGCTTGCTCGTAATCTCACTCGCCAGTTTGGGGCTGCTGCCATTCATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAACCAATTTCGAACTGGGAGATCTCCTGTGCTTGTAGCAACAGACGTTGCAGCTCGAGGACTGGACATCAAAGATATTAGGGTTGTTGTCAATTATGACTTCCCTACTGGTGTGGAGGATTATGTTCATAGGATTGGAAGGACAGGGAGGGCAGGAGCCACTGGCTTGGCATATACGTTTTTTGGAGACCAGGATGCTAAACATTCTTCAGATCTCATAAAAATCTTGGAAGGTGCAAATCAACGAGTCCCACCAGAACTTCGTGACATGGCATCACGTGGTGGTGGTGGGATGAACAGATCTAGGCGATGGGGTTCTGGTGGTCATGGAGGACGCAGTGATTCTGGATATGGAGGACGGGGTAACGATTCTGGTTATGGTGGAAGGGGTGGGTGGGGAGTCACTCCTGGTGGTGGCAGGGGTGGAGGCCGTGGGTTTGACAATGATTTGCAGAGGAATGATCGTGCTTACCATGGACAAGATGTGGATACCCATGAGAAGTATGATAAAGGAAGAAGTGGTAGCAGGAGCCCTGATGGGAGTAGGAACTTCTACCGTGATCGTAGTCGCAGTCGAAGTCCCAACAGGCCTGAAAGGGCTGCACCACCTTCTCAAGGCTTTAGTTTTCACCAGGCAATGATGCAACGTAAAGGGGCTGGTGATCATGACAAGAGCTTTGATCAAAATAGAAACCGAAGTCGCAGCCCTGTTAAGCATGATAGGGTACCATCTGGCCGGGAACGTTCCCCAGTTTATAGTTTTCATGAAATGATGATAAAACGTGGTCAATCAAAACACACATTTAGTACTCACCAGACCAGTTCACCATCGCCTCCTCGGGGCGGTGTCTCAGACCAGTTGGATAATGGAAGGTATGGTGGGCCTAATCCTTCCTACCTCGGGGAAGAGGAGGAAGGGATGATTCCTCAGGATGATGGTGCTTATGGGGTTGCGGATTAG | 2508 | 0.4805 | MNTRDLPSLTDPLSLSPDPLLPIRVPPSSSEILRLLPASSTILNSLVRLVCQGYTASSLAMAATATASSVGPRYAPHDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTNSASLPKPSSVPSSSVQVQQSPQGPRRDHSPDFNDRYGRSNVGGSNSEAGSRNHQNPKGGGSLNSHNGPNGMHMTGNVSSSVKSHGSSDAEVGLTPDSYRRRHEITVSGDNVPPPFTSFGSTGFPSEILREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRVGNDSRLGPTVLVLSPTRELATQIQDEAVKFAKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAPMEKHRRLEQILRSQDSGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHSSDLIKILEGANQRVPPELRDMASRGGGGMNRSRRWGSGGHGGRSDSGYGGRGNDSGYGGRGGWGVTPGGGRGGGRGFDNDLQRNDRAYHGQDVDTHEKYDKGRSGSRSPDGSRNFYRDRSRSRSPNRPERAAPPSQGFSFHQAMMQRKGAGDHDKSFDQNRNRSRSPVKHDRVPSGRERSPVYSFHEMMIKRGQSKHTFSTHQTSSPSPPRGGVSDQLDNGRYGGPNPSYLGEEEEGMIPQDDGAYGVAD | 835 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mibi02g0530 | 835 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 380 | 388 | IPR000629 | - | |
Mibi02g0530 | 835 | Pfam | Helicase conserved C-terminal domain | 460 | 568 | IPR001650 | - | |
Mibi02g0530 | 835 | MobiDBLite | consensus disorder prediction | 602 | 835 | - | - | |
Mibi02g0530 | 835 | Gene3D | - | 207 | 438 | IPR027417 | - | |
Mibi02g0530 | 835 | MobiDBLite | consensus disorder prediction | 109 | 139 | - | - | |
Mibi02g0530 | 835 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 192 | 607 | - | - | |
Mibi02g0530 | 835 | MobiDBLite | consensus disorder prediction | 732 | 762 | - | - | |
Mibi02g0530 | 835 | SMART | helicmild6 | 488 | 568 | IPR001650 | - | |
Mibi02g0530 | 835 | CDD | WW | 82 | 112 | IPR001202 | GO:0005515 | |
Mibi02g0530 | 835 | Pfam | DEAD/DEAH box helicase | 253 | 423 | IPR011545 | GO:0003676|GO:0005524 | |
Mibi02g0530 | 835 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 229 | 257 | IPR014014 | GO:0003724 | |
Mibi02g0530 | 835 | MobiDBLite | consensus disorder prediction | 663 | 711 | - | - | |
Mibi02g0530 | 835 | SUPERFAMILY | WW domain | 73 | 113 | IPR036020 | GO:0005515 | |
Mibi02g0530 | 835 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 260 | 434 | IPR014001 | - | |
Mibi02g0530 | 835 | SMART | ww_5 | 80 | 113 | IPR001202 | GO:0005515 | |
Mibi02g0530 | 835 | FunFam | ATP-dependent RNA helicase RhlB | 438 | 610 | - | - | |
Mibi02g0530 | 835 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 79 | 113 | IPR001202 | GO:0005515 | |
Mibi02g0530 | 835 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 301 | 583 | IPR027417 | - | |
Mibi02g0530 | 835 | ProSitePatterns | WW/rsp5/WWP domain signature. | 85 | 111 | IPR001202 | GO:0005515 | |
Mibi02g0530 | 835 | FunFam | probable ATP-dependent RNA helicase DDX17 | 199 | 437 | - | - | |
Mibi02g0530 | 835 | CDD | SF2_C_DEAD | 448 | 577 | - | - | |
Mibi02g0530 | 835 | Gene3D | - | 439 | 610 | IPR027417 | - | |
Mibi02g0530 | 835 | SMART | ultradead3 | 248 | 451 | IPR014001 | - | |
Mibi02g0530 | 835 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 463 | 607 | IPR001650 | - | |
Mibi02g0530 | 835 | MobiDBLite | consensus disorder prediction | 151 | 200 | - | - | |
Mibi02g0530 | 835 | MobiDBLite | consensus disorder prediction | 109 | 206 | - | - | |
Mibi02g0530 | 835 | MobiDBLite | consensus disorder prediction | 779 | 798 | - | - | |
Mibi02g0530 | 835 | Gene3D | - | 76 | 122 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mibi02g0530 | Mibi-ChrMibi02 | 5163305 | 5169440 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mibi02g0530 | 227 | 606 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 33.943 | 1.61e-65 | 223 |