Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0468 ATGGGCAAAAACACGGAGTTTCAGGACGCTCTTAATTTCGTGGTCCACGGTTCCTTACACAAGAATCGTACTCCTCACAAAGCAACAGAATCAGACGCCGCCACTCACGGCCGAAAATGGAAGATCTTCTACAGGTCATCATCGGCCGTCGCTTCCAAACAATCAAATCCCCAAAAAAAGAAAGAGCCGCCGGAAGAATTCCTGTGTCCCATATCAGGCTCTCTCATGGCTGACCCCGTCATCGTCTCCTCAGGCCACACCTTCGAGCGAGTCTCCGTTCAATCCTGTAAAAACTTAAACTTCACACCACGCCTCCCCGATGGCTCCACCCCCGATTTTTCCACCGTCATCCCCAACCTTGCCCTCAAATCCGCCATTGCCAAATGGTGCCAGAACTCAGCCAACCTACCACCCGAGCCTCCTGACGTGGCTTCTTCCGAGAAGTCCGTACATAGCCTAATGACGAAGAACCAGAAGATGGGTTCAAATATCCAGAACAAAACAGAGTCACCCAAGGTAGTAATCACAGAGGAGGAGCTGATTCAAGGAATGAAGGAAAACCCACCTGTGAATTTCAGTCACGCGGTGACGGAGATCAATCGACGGCCATCTCACCCTTACTGGAACTCGGAGGAATCGGTTGGTTCCTCCCCTGAATCTCCGCCTATGCAACTTTCAACTCGACCAAGCTGCTATTCCTCCTCTGCTTCTTCCTCAGAAAACGAAATCACCATCCACAGCTCACCCGAAGAAGACAACATCCTATCCAAGTTAAGAAGCTCACACGTCTCCGAGGTCGAAGAGGCCATTATTTCACTAAGAAAGCTCACGAAAACCAGAGAGGATACGAGAGCCCATATCTGTAATCCGAGACTACTCTCCATCCTCCGATCGCTGATCGTTTCAAAGAACATCAACATTCAGGTGAACGCAGTGGCAGCTCTGGTGAATCTCTCGTTGGAGAAAGTGAACAAGGTGAAGATTCTCCGATCAGGAATCTTTCCTCCATTGATCGAAGTATTGAAGGGAGGATCACGTGAAGTACAGGAACACGCTTCAGGCGCAATGTTCAGCTTGGCGATTCACGACGACAACAAGACGGCGATGGGGGTTCTGGGTGCCCTGCCGCCATTGCTGAGCCTGCTTCAATCGGAGAACGAGCGAACTCGGAATGACTCGGCGCTGGCACTGTACCACCTCTCGCTGGTACAGAGCAACCGGGTGAAGATGGTGAAACTCGGGTCGGTTCAGATCCTAATGGGTATGTTGAAATCGGGTAAGATGATGGGTCACGTGCTGCTCATACTTTCCAATTTGGCGTCTTGTGGGGATGGGAGGGCGGCCATGTTGGATGCGAAGGCGGTGGAGTGTTTGGTGGGGCTGTTAAGTGGCGGCGAGTTGGGGACCGGGTCGACCCGGGAGAGCTGTGTGGGGGTGATGTACGGACTGAGTCAGGGCGGGTTGAGGTTTAAGGCGGTGGGGAGGGCGGCGGGGGTGGTGGAGGTTATGAAGAAGGAGGAGAAGGTGGGGAGTGAGAGGGCGAGGGAGAAGGTGAAGAGGATTTTGGAGATCATGAGGATGAAGGAGGAAGCTGAAGATGATGATGACGTCGACTGGGAGGCCATTCTTGACTCGGGCTTTAGTACTCTGAGTCACTTGCCCGAGTCATGA 1671 0.5254 MGKNTEFQDALNFVVHGSLHKNRTPHKATESDAATHGRKWKIFYRSSSAVASKQSNPQKKKEPPEEFLCPISGSLMADPVIVSSGHTFERVSVQSCKNLNFTPRLPDGSTPDFSTVIPNLALKSAIAKWCQNSANLPPEPPDVASSEKSVHSLMTKNQKMGSNIQNKTESPKVVITEEELIQGMKENPPVNFSHAVTEINRRPSHPYWNSEESVGSSPESPPMQLSTRPSCYSSSASSSENEITIHSSPEEDNILSKLRSSHVSEVEEAIISLRKLTKTREDTRAHICNPRLLSILRSLIVSKNINIQVNAVAALVNLSLEKVNKVKILRSGIFPPLIEVLKGGSREVQEHASGAMFSLAIHDDNKTAMGVLGALPPLLSLLQSENERTRNDSALALYHLSLVQSNRVKMVKLGSVQILMGMLKSGKMMGHVLLILSNLASCGDGRAAMLDAKAVECLVGLLSGGELGTGSTRESCVGVMYGLSQGGLRFKAVGRAAGVVEVMKKEEKVGSERAREKVKRILEIMRMKEEAEDDDDVDWEAILDSGFSTLSHLPES 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0468 556 MobiDBLite consensus disorder prediction 203 250 - -
Mibi02g0468 556 Pfam U-box domain 64 132 IPR003613 GO:0004842|GO:0016567
Mibi02g0468 556 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Mibi02g0468 556 FunFam RING-type E3 ubiquitin transferase 43 135 - -
Mibi02g0468 556 SUPERFAMILY ARM repeat 253 505 IPR016024 -
Mibi02g0468 556 SMART arm_5 442 485 IPR000225 GO:0005515
Mibi02g0468 556 SMART arm_5 362 402 IPR000225 GO:0005515
Mibi02g0468 556 SMART arm_5 321 361 IPR000225 GO:0005515
Mibi02g0468 556 SMART arm_5 403 441 IPR000225 GO:0005515
Mibi02g0468 556 SMART arm_5 280 320 IPR000225 GO:0005515
Mibi02g0468 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 137 IPR013083 -
Mibi02g0468 556 Pfam Armadillo/beta-catenin-like repeat 363 401 IPR000225 GO:0005515
Mibi02g0468 556 PANTHER U BOX DOMAIN-CONTAINING 49 526 - -
Mibi02g0468 556 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 373 415 IPR000225 GO:0005515
Mibi02g0468 556 Gene3D - 246 535 IPR011989 -
Mibi02g0468 556 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Mibi02g0468 556 SUPERFAMILY RING/U-box 53 136 - -
Mibi02g0468 556 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 332 369 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0468 Mibi-ChrMibi02 4565443 4567113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0468 11 546 U-box Gene Family AT5G40140 51.111 4.85e-177 509