Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0439 ATGGTAGCACACATTAGTGGCATCCCAGTTCGTTTCTCAGGAAAAATGAGTAGACGTTCGAGCAGGACTGTCTACGTTGGGAACTTGCCGGGTGATATTCGTGAAAGAGAAGTCGAAGATCTGTTTGTCAAGTATGGACACATAACTCACATTGACTTGAAGGTTCCACCCAGACCCCCTGGGTATGCATTTGTAGAGTTTGAGGATGCTCAAGATGCTGAAGATGCAATTCGTGGTCGTGACGGCTATGATTTTGATGGGCATAGGTTACGGGTAGAGCCTGCACATGGTGGACGTGGTCATTCATCATCCAGAGATCGATATAGTAGCCACAGCAATGGTCGAGGTGGACGTGGGGTTTCTAGGCGATCTGAGTTCCGTGTACTGGTCACTGGGTTGCCATCTTCTGCTTCCTGGCAGGATCTTAAAGATCACATGCGGAAAGCAGGAGATGTTTGTTTTTCTCAAGTTTTTCATGACGGCAGAGGAACAACTGGGATTGTTGATTATACAAACTATGATGACATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAGAGGTTATGTTCGTGTGAGGGAATATGATTCAAGGCGGGACTCTAGAAGTCCTAGTCGTGACCGATCTTATTCTAGGGGCCGAAGTTATAGCCGCAGCCGCAGCCGTAGTTACAGTCGAGGGCGTAGTCAGAGCAAGTCTCCAAAGGGTAAATCTTCACAGCGTTCGCCTGCTAGATCTCCTTCAAGATCTGTTTCTCGCTCACGTTCTCGCTCGAAGTCAAAGTCTCGCTCTCTGTCAGGATATGGATACTTGGAGCAATCTGGGAATTGGAAATTAGGAACTTGGTGGGATTTTGTTCAATTGCCTGCAACTCAATTTGTTGTAGAGATTGGGAATCAAGGAGATCATGGATTGCTATTTTAG 945 0.4635 MVAHISGIPVRFSGKMSRRSSRTVYVGNLPGDIREREVEDLFVKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRGGRGVSRRSEFRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRGYVRVREYDSRRDSRSPSRDRSYSRGRSYSRSRSRSYSRGRSQSKSPKGKSSQRSPARSPSRSVSRSRSRSKSKSRSLSGYGYLEQSGNWKLGTWWDFVQLPATQFVVEIGNQGDHGLLF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0439 314 SMART rrm1_1 127 200 IPR000504 GO:0003723
Mibi02g0439 314 SMART rrm1_1 23 93 IPR000504 GO:0003723
Mibi02g0439 314 Gene3D - 13 124 IPR012677 -
Mibi02g0439 314 MobiDBLite consensus disorder prediction 223 258 - -
Mibi02g0439 314 Gene3D - 126 203 IPR012677 -
Mibi02g0439 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 97 IPR000504 GO:0003723
Mibi02g0439 314 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 16 125 - -
Mibi02g0439 314 MobiDBLite consensus disorder prediction 201 221 - -
Mibi02g0439 314 SUPERFAMILY RNA-binding domain, RBD 20 191 IPR035979 GO:0003676
Mibi02g0439 314 MobiDBLite consensus disorder prediction 201 273 - -
Mibi02g0439 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 204 IPR000504 GO:0003723
Mibi02g0439 314 FunFam serine/arginine-rich splicing factor SR34A-like 126 203 - -
Mibi02g0439 314 MobiDBLite consensus disorder prediction 88 122 - -
Mibi02g0439 314 CDD RRM2_SF2_plant_like 126 201 - -
Mibi02g0439 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 91 IPR000504 GO:0003723
Mibi02g0439 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 190 IPR000504 GO:0003723
Mibi02g0439 314 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 13 270 - -
Mibi02g0439 314 CDD RRM1_SF2_plant_like 23 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0439 Mibi-ChrMibi02 4362054 4366795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0439 3 204 Eukaryotic Initiation Factors Gene Family AT4G34110 25.472 5.29e-06 46.2