LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi02g0411	ATGTGTGGTGGTGCTATCATCGCCGACTTCATCCCTCGCCACCGTGGCCGCCGCCTTTCCGCCTCGGACATCTGGCCCAATTCCCTCGGCAAGCCCAATAATGACGACTCCGACTTCCACTTCCACTCTATTGTCTCCAGCAAGTCATCATCCCATTCCCACCCTTCCCCTTCCCCAGGAGGTGTTGATGAGGAAGCAGAGAAGCCTCTGAAAAGGCAGAGGAAGAACCTCTACCGTGGGATTAGGCAGCGTCCATGGGGTAAATGGGCCGCTGAGATTCGTGATCCCAGGAAAGGGGTTCGTGTTTGGCTTGGTACCTTCAATACTGCTGAGGAAGCCGCCAGGGCCTATGACAGAGAAGCTCGCAAAATCCGAGGTAAGAAAGCCAAAGTCAATTTCCCCAACGAAGACGACGCTTACTCCCTTCACGCTCAGGCTCGCCCTAATAATCATCCACCGCCTCCTCCTCTCCGATCCCCTGTTTCTCCCCTCTACCCACAACTGTACGGCTCAGGCTCAAACATGAACAATGTCCCCAAGAGCTTCAATCTGGAGTTTGGCTACGATCTGAACCAAACGGGCACAATTCCTTCCCTTGGATTCGATCCGAATCTTGTTTCTGGAGATGAGCATTCTGGGTCTGCTTCCGAGGGTGCCTACTCCACGGTTCAATTACTGGCCTCCCATCACAAAGGGAATGGCTATTCGTCTCAGAATTCGAATGCGGAGTTGGAAACAAAGGCGAACGCGGTGGTGGTGGTGGAAGGAGTGGAAGAGAAGAACGAGATAGAGAAGCTGTCGGAGGAGCTGATGGCGTACGAGAACTACATGAAGTTTTATCAGATTCCATTTTATGACGGCCAATCGACGGCGTCCAATAATTTACAGGAAAACGTGGTGGGTGATCTCTGGAGCTTCGACGATGAGGCCATCCCTGCTTCCGCGGCGTCATCGGCCCTGTGA	963	0.5337	MCGGAIIADFIPRHRGRRLSASDIWPNSLGKPNNDDSDFHFHSIVSSKSSSHSHPSPSPGGVDEEAEKPLKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDAYSLHAQARPNNHPPPPPLRSPVSPLYPQLYGSGSNMNNVPKSFNLEFGYDLNQTGTIPSLGFDPNLVSGDEHSGSASEGAYSTVQLLASHHKGNGYSSQNSNAELETKANAVVVVEGVEEKNEIEKLSEELMAYENYMKFYQIPFYDGQSTASNNLQENVVGDLWSFDDEAIPASAASSAL	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi02g0411	320	ProSiteProfiles	AP2/ERF domain profile.	77	134	IPR001471	GO:0003700\|GO:0006355
	Mibi02g0411	320	SUPERFAMILY	DNA-binding domain	77	135	IPR016177	GO:0003677
	Mibi02g0411	320	Pfam	AP2 domain	78	126	IPR001471	GO:0003700\|GO:0006355
	Mibi02g0411	320	CDD	AP2	78	135	IPR001471	GO:0003700\|GO:0006355
	Mibi02g0411	320	FunFam	Ethylene-responsive transcription factor 2	76	135	-	-
	Mibi02g0411	320	PRINTS	Ethylene responsive element binding protein signature	78	89	IPR001471	GO:0003700\|GO:0006355
	Mibi02g0411	320	PRINTS	Ethylene responsive element binding protein signature	100	116	IPR001471	GO:0003700\|GO:0006355
	Mibi02g0411	320	PANTHER	DNA-BINDING DOMAIN	53	256	IPR044808	GO:0003700\|GO:0009873
	Mibi02g0411	320	Gene3D	AP2/ERF domain	77	135	IPR036955	GO:0003700\|GO:0006355
	Mibi02g0411	320	MobiDBLite	consensus disorder prediction	45	69	-	-
	Mibi02g0411	320	SMART	rav1_2	77	140	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi02g0411	Mibi-ChrMibi02	4132838	4133886	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi02g0411	1	192	AP2-EREBP Transcription Factor Family	AT3G16770	42.857	1.65e-45	153

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi02g0411		AP2	9.7e-13	CL0081