Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0381 ATGGAGGGGTGTCCCAACTTCAGAGAGAGAGAGAGAGAGAGGGAGAGAATACAGAGTAACAGACCAAATTTGAAAAGAAAAAAAAAACATACAGAGCTGTTTCCAGAAACAGAGAGAAGAAGGTGGGAGAAAAATATGGAAGAAGTAGTATTATTAGTTGATGATTTGAAATTACTTTCTGCGATTCCTCGCTGCAGAATATGTCATGAAGAAGAATTTGAGACTTCCCAAAGCCTTGAAGCTCCTTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCACAGAGATTGCATACAAAGATGGTGCAACGAGAAAGGAAACACTATTTGTGAAATATGTCTTCAGCAATATGAACCTGGATATACAGCAGCCCCTAAGAAATCTCAGATAGATGACGCGGCTATGACAATCAGAGATAGCCTGCAAATTCCAAGGGATGAAGAACCGTTAAGCGCAAGATTAGGGGGTAGTGATGAAGAAGTCACCATAAGAGAGGGGGATTTTTCTGAGTGCACTTCTTCTGCTGATAGAGGTGCTTCTTGCTGCCGATCACTGGCTTTATTTTTTACACTCGTTTTGCTTGTTAGACATCTTTTCGTAGTGCTTACAAGTACAAAGGAAGATTACCCATTTTCACTTTTAACGGTCTTTATACTAAAATCTAGCGGAATCATTCTACCCATGTACATAATCATGAAGGCGATAGGAGGCATATATGGCAATATTCAACGTCATTACCAGGATTCTGACGACGACACATCAGCATCTGAAAGTGAAGATGAAGAGAGTGAACTAATGCATGATACAATTGTTCCACATCATCGATAA 825 0.4024 MEGCPNFRERERERERIQSNRPNLKRKKKHTELFPETERRRWEKNMEEVVLLVDDLKLLSAIPRCRICHEEEFETSQSLEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQQYEPGYTAAPKKSQIDDAAMTIRDSLQIPRDEEPLSARLGGSDEEVTIREGDFSECTSSADRGASCCRSLALFFTLVLLVRHLFVVLTSTKEDYPFSLLTVFILKSSGIILPMYIIMKAIGGIYGNIQRHYQDSDDDTSASESEDEESELMHDTIVPHHR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0381 274 SUPERFAMILY RING/U-box 64 117 - -
Mibi02g0381 274 SMART ringv_2 64 113 IPR011016 GO:0008270
Mibi02g0381 274 CDD RING_CH-C4HC3_MARCH 65 112 - -
Mibi02g0381 274 FunFam E3 ubiquitin-protein ligase MARCH4 54 122 - -
Mibi02g0381 274 MobiDBLite consensus disorder prediction 248 274 - -
Mibi02g0381 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 123 IPR013083 -
Mibi02g0381 274 MobiDBLite consensus disorder prediction 1 32 - -
Mibi02g0381 274 Pfam Protein of unknown function (DUF3675) 118 234 IPR022143 -
Mibi02g0381 274 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 54 243 IPR033275 -
Mibi02g0381 274 Pfam RING-variant domain 65 112 IPR011016 GO:0008270
Mibi02g0381 274 MobiDBLite consensus disorder prediction 1 20 - -
Mibi02g0381 274 ProSiteProfiles Zinc finger RING-CH-type profile. 57 119 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0381 Mibi-ChrMibi02 3866917 3870784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0381 65 112 C3H Transcription Factor Family AT5G05830 38.462 1.81e-06 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g0381 02 3866917 3870784 Mibi06g2610 06 46180540 46183050 CCT
Mibi02g0381 02 3866917 3870784 Mibi02g0381 02 3866917 3870784 ECH