Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0368 ATGTCGAAGCGGAAGTTCGGGATTGAAGGCTTTGGCATCAACCGCCAATCGACCTATAATTTTGAGAGATCTCAAGCTCCTCAGCGACTGTATGTTCCTCCTTCATCACGTCACGGGCATGACAATTACGAGGATACCGACCTTGATAACATCGAATATGACGATAATGATGCTCCCAAAGACGGAAACAATGTTAATGACGGCAAGGACGATGGCAACAGCGACGATGTTGATCCCCTTGATGCTTTCATGGAAGGTATTCACGAGGAAATGAAAGCCGCGCCGCCTCCGCAGCCGAAGGAGAAGGCAGAGGACAGGTATAGGGATGACGATGAGGACGACCCGATGGAGAGTTTCTTGAGGGCGAAGAAGGACGTTGGGTTGACCCTGGCGTCTGATGCTTTGCACGCTGGATATGACTCTGATGAAGAGGTTTATGCAGCTGCCAAAGCTGTAGACGCGGGAATGATAGATTATGACTCTGACGATAACCCTATTCTCCTCGACAAGAAGAAGATTGAGCCCATTCCTGCTTTGGACCACAGTTCCATCGAGTACGAGGCCTTTAACAAGGATTTTTACGAGGAGAAACCTTCAATATCTGGTATGAGCGAGCAAGATGTTGCTGAATACAGGAAGAGTTTGGCCATACGTGTATCAGGTTTTGATGTTCCGAAGCCAATTAAGACGTTTGAAGACTGTGGTTTCTCTCCGCAACTTATGGGTGCCATAAAGAAGCAAGGCTATGAGAAGCCAACATCAATACAATGCCAGGCTTTACCAGTTGTGCTCTCTGGCCGAGATATAATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCCGCCTTTGTCCTCCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAAGAAGGTCCAATAGGAGTAATATGTGCTCCGACTAGAGAACTGGCACATCAGATATACTTGGAGGCGAAGAAATTCGCAAAACCCTATGGGTTACGTATTTCTGCTGTCTATGGTGGAATGTCAAAACTGGATCAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCGACCCCTGGCAGATTGATAGACTTGCTGAAAATGAAGGCACTTACGATGATGAGAGCAACTTACTTAGTGCTTGATGAGGCTGATAGGATGTTTGACCTTGGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATCAGGCCTGATCGCCAAACTTTACTTTTTTCTGCAACAATGCCCCGTAAAGTGGAGAAGTTGGCCAGGGAAATTCTTAGTGATCCTGTTAGAGTGACAGTTGGGGAGGTTGGAATGGCAAATGAAGACATTACTCAAGTTGTTCATGTGATTTCTTCTGATTCAGAGAAAATGCCGTGGCTTCTTGAGAATCTGCCTGGAATGATTGACCAAGGTGATGTCTTGGTATTTGCTTCCAAAAAGGCTACTGTGGATGAAATTGAATCACAACTGGTACAAAGAAGCTTTAAAGTGGCAGCTCTGCATGGTGATAAAGATCAAGCTTCTCGAATGGATATCTTGCAGAAGTTCAAATCTGGTGCCTATCATGTTCTTATTGCGACTGATGTTGCTGCCCGTGGTCTTGACATCAAATCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAAGATATGGATATGCATGTACATCGCATTGGCAGAACAGGTCGTGCCGGTGACAAAGATGGTGTTGCATACACTCTTATAACTCAAAAAGAAGCACGTTTTGCTGGTGAGCTGGTTAATAGCTTAGTAGCAGCTGGTCAGAATGTGTCCATGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCCAAACGTGATGCTAGAAAAGGAGGTGGGAGAAAAGGTAAAGGGAGGGGAGGAGGTGGTGGTAGAGGTGTTCGTGGAGTGGATTTTGGCCTGGGTATTGGATACACTCCGGAGTCGAATAATCCTTCACCTACCACGACAAATCGATCTGCCGCTGTGAACTCACTGCGTACAGGGATGATGGCACAATTTAGGAGCAGCTTTGTTGCTGCCTCGTCAACCTCTCAAAACCAAACTTTCAGTAACAGTACAAGTATGCCTGCTAATAAGAGACCCGCCCTCCCTGGCTTCGTATCTGGTGGTTCAATTGGTGGTGATGTAAATTCTAATCAGACTCTTGCTTCATCCAGACCTGCTACTTCGGCAGTAAATGCAAGTAGTCACAACTCTGGAGTTGATGCTGGTCAGAGGATTACCGACAGCACCAAGCCCAGAGAAAGGAGGAGACCTTCGGGTTGGGACAGATAG 2316 0.4598 MSKRKFGIEGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIEYDDNDAPKDGNNVNDGKDDGNSDDVDPLDAFMEGIHEEMKAAPPPQPKEKAEDRYRDDDEDDPMESFLRAKKDVGLTLASDALHAGYDSDEEVYAAAKAVDAGMIDYDSDDNPILLDKKKIEPIPALDHSSIEYEAFNKDFYEEKPSISGMSEQDVAEYRKSLAIRVSGFDVPKPIKTFEDCGFSPQLMGAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYGLRISAVYGGMSKLDQFKELKAGCEIVVATPGRLIDLLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVISSDSEKMPWLLENLPGMIDQGDVLVFASKKATVDEIESQLVQRSFKVAALHGDKDQASRMDILQKFKSGAYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSMELMDLAMKDGRFRSKRDARKGGGRKGKGRGGGGGRGVRGVDFGLGIGYTPESNNPSPTTTNRSAAVNSLRTGMMAQFRSSFVAASSTSQNQTFSNSTSMPANKRPALPGFVSGGSIGGDVNSNQTLASSRPATSAVNASSHNSGVDAGQRITDSTKPRERRRPSGWDR 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0368 771 CDD SF2_C_DEAD 447 579 - -
Mibi02g0368 771 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 260 435 IPR014001 -
Mibi02g0368 771 MobiDBLite consensus disorder prediction 755 771 - -
Mibi02g0368 771 Gene3D - 437 613 IPR027417 -
Mibi02g0368 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 438 IPR027417 -
Mibi02g0368 771 MobiDBLite consensus disorder prediction 614 640 - -
Mibi02g0368 771 CDD DEADc_DDX42 240 436 - -
Mibi02g0368 771 Gene3D - 191 436 IPR027417 -
Mibi02g0368 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 608 IPR027417 -
Mibi02g0368 771 MobiDBLite consensus disorder prediction 713 771 - -
Mibi02g0368 771 MobiDBLite consensus disorder prediction 53 113 - -
Mibi02g0368 771 MobiDBLite consensus disorder prediction 13 31 - -
Mibi02g0368 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 446 609 IPR001650 -
Mibi02g0368 771 MobiDBLite consensus disorder prediction 1 113 - -
Mibi02g0368 771 MobiDBLite consensus disorder prediction 719 753 - -
Mibi02g0368 771 Pfam Helicase conserved C-terminal domain 470 569 IPR001650 -
Mibi02g0368 771 SMART ultradead3 248 450 IPR014001 -
Mibi02g0368 771 Pfam DEAD/DEAH box helicase 253 424 IPR011545 GO:0003676|GO:0005524
Mibi02g0368 771 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 381 389 IPR000629 -
Mibi02g0368 771 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 195 609 - -
Mibi02g0368 771 SMART helicmild6 488 569 IPR001650 -
Mibi02g0368 771 FunFam probable ATP-dependent RNA helicase DDX17 191 438 - -
Mibi02g0368 771 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 229 257 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0368 Mibi-ChrMibi02 3766057 3771065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0368 229 585 Eukaryotic Initiation Factors Gene Family AT3G13920 35.000 2.31e-61 211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g0368 02 3766057 3771065 Mibi02g0368 02 3766057 3771065 ECH