LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi02g0281	ATGCCTCTTCACGAGCTATACAGAATGACTAAAGCGAAACTTGATTCGAAAGAGAAAGACGATACACGTGCAACCGATCAATCTTTCGCACCGGAGAATGACTTTTTGGAGCTGGTTTGGGAAAATGGTCAGATTTCGATGCAGGGTAAGTCAAGCAGAGCGAGAAAGAGCCCAATACATAAGAGCCTTCCATCTCACAGCTTACCATCTCACAGTCCAAGGACTCGCGATAAAGATGTAGGATTTGGCATCGACTCAAGGATGGGTAAGTTAGGGCATTTAGACTCTGGATTGAATGAAATTCCAATATCTGTTCCTTCGGATGATATGAATTTGAGTCAAGATGAAGACATGATACGTTGGTTGAATTATCCAATGGATGACTCTTTGCAACATGAATATAGTTTTGATTTTACGCGTGATGTTTCTGGGGTCACCGTAAATGAGTTCCCAGCTACCTCAAATAATTTCGCTCTGTTGGATAAAAGAAGCAACGACAATCAGGTATGTAAGGACTCTCACAGAAGTCCTGTGCCTGGTGTTTCAAGTTCGGAACAAGCAAATCTTACCAAGGCAGAAGTTGAGACTGGTGGGCCGAAAGGAAACAACAACCAGTTATACCCAGCATCATCGCAGCAATGCCTAACATCATTTGCTTCTAATAGACCCAAAATATCAGATATCATTGAAAATAATACAAGTAATGCAGTACTGCAAGCACCTCGCGGGGAAATCACTCAGATTCCACCTTCCTCTAGTGGTTTTTGTAGCCTGAATATGCAGAAACAAGATCCCTCATGTCAGAGGAATAGTTCCAACATGATGAATTTCTCCCATTTTGCAAGACCTGCGGCCATTGTGAGAGCTAATCTTCAGAGCATAAGTATGATGTCTGGTTTGTCTTCAGCAAGATCAGAAAGCTTGGGAACCAGGAAGAAAGATGTTGGTGCAAGTAGTAGCAACCCTCCTGAATCAGCACTCGTTGATTTAGATAGTCAACAGAACTGTCAAAAGCTGGTCATAGACCCATCAAAAGCTGAGTTGAAACCAGCCAATCCGGAATCTTTCGAACAGAAGGCTGATTTTGCAAAGCAGTTTGAGCCTGCCTGCAGAGAGGACTGGGCATCTAAGAATGATCAAATTTCCAACCAAGTTCTTGTGGAAGGTGGCAATAAAGGCCAGCCCGCTGTTGAAAAAAGCATTCACCCTGAAGTAGCCTCTTCCTCCATTTGCTCAGGAAATGGTAAGAAGAGAGGTTCAGATAACGCAAATAAGAATTTGAAGAGAAAAAGTCAAGATACTGAGGACTCTGAGTGTCAAAGTGAAGAAGTTGAGGAAGAATCGGTGGGCATTCAAAAGTCAGCTCCTGCACGATGTTCAAGTTCTAAGAGAAGTCGTGCAGCTGAAGTGCATAATCTATCTGAACGGAGGCGGAGAGACAGGATCAATGAGAAGATGCGTGCTTTACAAGAACTCATCCCAAATTGCAACAAGGTGGATAAAGCATCAATGCTCGATGAGGCAATTGAGTATCTTAAAACACTTCAACTCCAAATTATGTCAATGGGAGCTGGTTTATATGCGCCTCCAAATCCAATGATGTTACACTCAGGAATGCAGCACATGCAGACACCACTTATGGCTTCATTCTCACCCATAGGAATTGGCATGCAAATGGGGATAGGAATGGGTTATGGGGTGAGGATGTCTGACATGAATTGTGGATCACCTAGATTCCCAATGGTTCAGGTGCCCCAAATGCAAGGAACTCATTTCCCTGTTTTGCCCATACCTGGACCCACTGCTGCTTTACATGCGATGCCAAGATCAAGTCCCCAGGTATTCGGTTTTCCTGGTCAGGGACTTTACATGCCCATGCCAAATGCTCAAGGAGTTTCTATGGTAGGAGGGCCCCTTTTGAACCCAGGACAAAATGCCTTTGGAGCTGCAGGACTTGGGGAAACTGTTGATTCGGCTTCAGCCTCTAGTTTAAAGGATCCAATGCTAAATGTGAATTCTCAAGTTATGCCAAGCACAGGTTGCAGTAACTCTGCAATGCAGATGTCCACTCAGTGTGAAGCCACAAATGTCGGAATAGATCAGACAGCTCTAGTGCATGCTAGCGGGAATACCTCCAATATTGATGACAGCAGAACTACTAATCCTGGCAAAGAAGATAACCTTGTGATTGGTCAATCTTGTAATAACTGA	2211	0.4383	MPLHELYRMTKAKLDSKEKDDTRATDQSFAPENDFLELVWENGQISMQGKSSRARKSPIHKSLPSHSLPSHSPRTRDKDVGFGIDSRMGKLGHLDSGLNEIPISVPSDDMNLSQDEDMIRWLNYPMDDSLQHEYSFDFTRDVSGVTVNEFPATSNNFALLDKRSNDNQVCKDSHRSPVPGVSSSEQANLTKAEVETGGPKGNNNQLYPASSQQCLTSFASNRPKISDIIENNTSNAVLQAPRGEITQIPPSSSGFCSLNMQKQDPSCQRNSSNMMNFSHFARPAAIVRANLQSISMMSGLSSARSESLGTRKKDVGASSSNPPESALVDLDSQQNCQKLVIDPSKAELKPANPESFEQKADFAKQFEPACREDWASKNDQISNQVLVEGGNKGQPAVEKSIHPEVASSSICSGNGKKRGSDNANKNLKRKSQDTEDSECQSEEVEEESVGIQKSAPARCSSSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQIMSMGAGLYAPPNPMMLHSGMQHMQTPLMASFSPIGIGMQMGIGMGYGVRMSDMNCGSPRFPMVQVPQMQGTHFPVLPIPGPTAALHAMPRSSPQVFGFPGQGLYMPMPNAQGVSMVGGPLLNPGQNAFGAAGLGETVDSASASSLKDPMLNVNSQVMPSTGCSNSAMQMSTQCEATNVGIDQTALVHASGNTSNIDDSRTTNPGKEDNLVIGQSCNN	736

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi02g0281	736	MobiDBLite	consensus disorder prediction	168	206	-	-
	Mibi02g0281	736	MobiDBLite	consensus disorder prediction	709	736	-	-
	Mibi02g0281	736	FunFam	Basic helix-loop-helix transcription factor	461	524	-	-
	Mibi02g0281	736	MobiDBLite	consensus disorder prediction	421	437	-	-
	Mibi02g0281	736	MobiDBLite	consensus disorder prediction	405	420	-	-
	Mibi02g0281	736	CDD	bHLH_AtPIF_like	466	526	-	-
	Mibi02g0281	736	SMART	finulus	472	521	IPR011598	GO:0046983
	Mibi02g0281	736	PANTHER	TRANSCRIPTION FACTOR PIF3	1	689	IPR044273	GO:0003700\|GO:0006355
	Mibi02g0281	736	MobiDBLite	consensus disorder prediction	177	206	-	-
	Mibi02g0281	736	MobiDBLite	consensus disorder prediction	464	479	-	-
	Mibi02g0281	736	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	463	528	IPR036638	GO:0046983
	Mibi02g0281	736	MobiDBLite	consensus disorder prediction	302	332	-	-
	Mibi02g0281	736	Gene3D	-	461	522	IPR036638	GO:0046983
	Mibi02g0281	736	Pfam	Helix-loop-helix DNA-binding domain	470	516	IPR011598	GO:0046983
	Mibi02g0281	736	MobiDBLite	consensus disorder prediction	47	78	-	-
	Mibi02g0281	736	MobiDBLite	consensus disorder prediction	389	479	-	-
	Mibi02g0281	736	Coils	Coil	427	447	-	-
	Mibi02g0281	736	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	466	515	IPR011598	GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi02g0281	Mibi-ChrMibi02	2802660	2806798	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi02g0281	1	542	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G09530	36.166	2.29e-66	227

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Mibi02g0281		HLH	8.1e-14	No_clan