LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi02g0279	ATGACCAGAAGCAGAGTGACTCTGGCATATATCTCCAATGATGCTGCGAGGAAAATAACCTTTAAGAAAAGGAAGAAGGGTCTTGCAAAGAAGGTTAGTGAACTAACCACTCTTTGTGGGATCCAAGCATGCGCAGTCATATACAGCTCTTATGATTCCAGACCTGAGGTTTGGCCAGATTCAAGAGGAGCTCAAGAGGTAATTACAAGGTTTCAGAAAGCACTTGTGCCAGATGAAAAAAGGAATTTGAACCAGGAGAGTTTTACTAGGCAGAGGATTGCCAAAATTAGTGCGCAGCTCAAGAAGCAGCGTAAACAGAATCATGAGAAGGTGACGAATCTGGCTATGTTTCGGTGCGTTGAAAGGCAGAGCATCGATGATCAGGCGATGGTGGTGGATCCTGATGACATGGATCGCCTGGCCCAGGAGAACATAAACAACATCGAGAACAAGTTGGACGAGTTAATTTAA	471	0.4459	MTRSRVTLAYISNDAARKITFKKRKKGLAKKVSELTTLCGIQACAVIYSSYDSRPEVWPDSRGAQEVITRFQKALVPDEKRNLNQESFTRQRIAKISAQLKKQRKQNHEKVTNLAMFRCVERQSIDDQAMVVDPDDMDRLAQENINNIENKLDELI	156

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi02g0279	156	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Mibi02g0279	156	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Mibi02g0279	156	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Mibi02g0279	156	PANTHER	MADS BOX PROTEIN	3	151	-	-
	Mibi02g0279	156	Coils	Coil	138	156	-	-
	Mibi02g0279	156	ProSiteProfiles	MADS-box domain profile.	1	50	IPR002100	GO:0003677\|GO:0046983
	Mibi02g0279	156	SUPERFAMILY	SRF-like	1	79	IPR036879	GO:0003677\|GO:0046983
	Mibi02g0279	156	FunFam	Agamous-like MADS-box protein AGL80	13	97	-	-
	Mibi02g0279	156	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	50	IPR002100	GO:0003677\|GO:0046983
	Mibi02g0279	156	Gene3D	-	13	96	IPR036879	GO:0003677\|GO:0046983
	Mibi02g0279	156	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi02g0279	Mibi-ChrMibi02	2755893	2756363	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi02g0279	1	155	Type I MADS-box Gene Family	AT5G48670	45.625	1.01e-35	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Mibi02g0279		SRF-TF	7.6e-17	No_clan