Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0222 ATGACTAGTTACAGACGATTCCCAACAACACCATCAACTCGGCAAATCGACCAGAGTCGATGCAGTCTGCGGCCGAAAGGAACAATTTTTTTTGATATTGCAGAAATAAATTCTTCTTTTCCGGTGATTTTGTTCCTCCTCTCGCAGATGGTAAGGGGAGGAAAGGTTGGTGCTAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGGAAGGGGGTTCTGATGATTCAGATGAGGACTATGTGGTTCCAGATGAAGCTAGAGAATTGTCTGATTGTTCGGAGGATTCATTATTTTCTTTAGATGGATGTGAATTCGAGGAGAGTTTTGATGGGTTTGTAGAGGATGAGGAGGAGGAAATTGAAGTAAGGAGGAAATTCAACAGATCCAAGACTAAAAATGGCATTTGTGGTCGGCAGAAAATTGGCAGGAAGCCCTCACAACAGAGAGGAAGGATAACTTATTCGCATCAACTAGAAGAAGATAAAGAAGTAGAAGAACAAGAATACAAAGAGGAAGAAGGAGAAGAACCAGAATACAAAGAGGAGGAAGAAGAAGAACCAGAACTAGAAAAGGAAGGCGATGAAGAGACAGATGAATATCAGGGAGATGATGCTGATGAAGATTTTGATTGTGATGAGGATGGGGATGAGGATGAGGATGAGGATGAGGAATTTACACCTGAGGAAGAAGATTACTCAGATGAGGAAGAAATAATGGGGAGGAAGAAGAAAAGTAATGGTGTAAAAATGAGCAAGAGGGCTGTTCAGAAGCGGGCTTCTGTAACTTATACTAGAGGCCGTAAGAGAAGAAAGAATTCTAGAGCTGCAAGGAAGCCTTTGAGAAAGAAGAGAAGAAAGAATGGAGGGTTGAGGAGGAAAGAAAAGCATGATGATCAGGGTGATTTTATAGAAAATGGTCCAACCATCAGAACTAAGAGTAAGAAAAAACCAGGACGTAAAAGGAGAAGACTAATTGTTGATTCAGATTCATGCTCAGATTGTGTGTCATCTAGATCATCTGATTATGAATATACCATCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGGAATTGTGTGGAAGTTTGAGAACTAATTTGAGGAATTCATCCCTTCTGACAAAAATTGAAGAGGATGGAGTCCTTGAAGATCTACATCAGCAAAGAAAGCCTCCAGCTCGGAAAGGTAAGGAAAAGATAGAGGAACATCAGGGGAGAAAGGGCAAAGACAAGGTAGAGGATTTAAAAAGCAAGCCAGGAAAGCAGGTGTGTGGTATTTGTCTCTCTGAAGAAGATAAAAGAAGAGTAAGAGGAGTACTAGATTGTTGCACACACTTTTTCTGTTTTGCTTGCATTATGGAGTGGGCAAAAGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTTAAAACAATCTGTAAGCCTGCACGATCAACAACAGCGGGGGTTGATTTGAGAGGATCAGTTATACAAGTCCCTGAACGAGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGTATGTAATGTGTTCAGAGTGCCTCCAAGGTGGAGATGACGGCCTCATGTTACTGTGTGATCTCTGTGACTCCCCTGCACACACATATTGTGTTGGGCTGGGTCGTGAAGTACCTGAAGGCAATTGGTATTGTGATGGTTGTAGGCCAGTTGCTTTGGGATCTTCAAGTTCTCAAGTTCAGGAAGGTGTGGCTGATTCAAGGGCAACTACAATTCAGAGCCTACCTGGCAGACCATCGCCCGCTGTACATGCAAGAGAAACCATTGACCTCAACTTGATGTCTTCACCGCGTCCAACTTTTACCCAAGGATTCGGGAATTTTCCTTCTAGGTTTTCTGGTAGAGGTGTTGAAGGAGCTTCTCCAGTGTCTGGAGGAGGGGCACCAACTTTATCTGAGAGACGTTGGATACACCGGCAAATTCAACAATTACTTTCAATGGATAGAATGACTTCTGCTACCGGTCGATCTAATGGCATTTCAGCTACCAACGCATCTAGTAACTTAAATGGCTCTCAAAATGATCAAAGTAGGTTAACAACCACTCAAGACACTAGGACACAGAACGTGGGAACATCATCATACCACTCATTTTTTGAGGAGAGATTACGCAACAGTACCTCTCCAATAATGCAGAATGGGGATCATTTCTCTATGAGAATAAGCAATTCAAGAAGGCCAGTAGTTCAAGACCCAACTCCATTCACCAACAGAGCTACGAACGGGGCATTTTGGCCTGGTCTTGTGGGGACACCTCCTGTATCCGATTATGGGCAAGTCCATCAGCTCAGCAGCAGTTCACACATTGTTGGTGATGGTAGCATGTCCGCTACCATTAGAGACGAGAGTAACTTTCACATAGTAAAGGAGGAATTGTCATCACTCGTTAAACGCCACCTTATGGGTTTGTCACAAAATATTGATTTGGGCAACAGTACCATCAAGGACATCGCAAGGATTTCTCTGAACACCATACTAGCAGCTTGTGGTCTTGAGCACAAAATGAGCGAGGTTTGCGCTGTTGCCCCTCCTTCAGCCTGTCCCCACATTGAACTAATTGCTGGTGGGCAAACGAGTCTGATAAAGGGTTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGACGTGGTTAAGAGGGTCATGGACACAAGAATGTCGCAGTGGTTGCGACTAGGCCTTTAG 2724 0.4347 MTSYRRFPTTPSTRQIDQSRCSLRPKGTIFFDIAEINSSFPVILFLLSQMVRGGKVGAKRNFRKRVRSKEGGSDDSDEDYVVPDEARELSDCSEDSLFSLDGCEFEESFDGFVEDEEEEIEVRRKFNRSKTKNGICGRQKIGRKPSQQRGRITYSHQLEEDKEVEEQEYKEEEGEEPEYKEEEEEEPELEKEGDEETDEYQGDDADEDFDCDEDGDEDEDEDEEFTPEEEDYSDEEEIMGRKKKSNGVKMSKRAVQKRASVTYTRGRKRRKNSRAARKPLRKKRRKNGGLRRKEKHDDQGDFIENGPTIRTKSKKKPGRKRRRLIVDSDSCSDCVSSRSSDYEYTISEEEREQVREAEELCGSLRTNLRNSSLLTKIEEDGVLEDLHQQRKPPARKGKEKIEEHQGRKGKDKVEDLKSKPGKQVCGICLSEEDKRRVRGVLDCCTHFFCFACIMEWAKVESRCPLCKQRFKTICKPARSTTAGVDLRGSVIQVPERDQVYQPSEEELRSYIDPYEYVMCSECLQGGDDGLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADSRATTIQSLPGRPSPAVHARETIDLNLMSSPRPTFTQGFGNFPSRFSGRGVEGASPVSGGGAPTLSERRWIHRQIQQLLSMDRMTSATGRSNGISATNASSNLNGSQNDQSRLTTTQDTRTQNVGTSSYHSFFEERLRNSTSPIMQNGDHFSMRISNSRRPVVQDPTPFTNRATNGAFWPGLVGTPPVSDYGQVHQLSSSSHIVGDGSMSATIRDESNFHIVKEELSSLVKRHLMGLSQNIDLGNSTIKDIARISLNTILAACGLEHKMSEVCAVAPPSACPHIELIAGGQTSLIKGCCSSCFDSFVGDVVKRVMDTRMSQWLRLGL 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0222 907 Pfam PHD-finger 519 564 IPR019787 -
Mibi02g0222 907 SUPERFAMILY FYVE/PHD zinc finger 488 564 IPR011011 -
Mibi02g0222 907 ProSiteProfiles Zinc finger RING-type profile. 425 467 IPR001841 -
Mibi02g0222 907 SMART ring_2 425 466 IPR001841 -
Mibi02g0222 907 SMART PHD_3 518 563 IPR001965 -
Mibi02g0222 907 Pfam Ring finger domain 424 467 IPR001841 -
Mibi02g0222 907 PANTHER F18C1.6 PROTEIN 50 898 - -
Mibi02g0222 907 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 473 IPR013083 -
Mibi02g0222 907 MobiDBLite consensus disorder prediction 387 415 - -
Mibi02g0222 907 MobiDBLite consensus disorder prediction 262 290 - -
Mibi02g0222 907 MobiDBLite consensus disorder prediction 136 340 - -
Mibi02g0222 907 MobiDBLite consensus disorder prediction 164 235 - -
Mibi02g0222 907 Coils Coil 347 367 - -
Mibi02g0222 907 CDD RING-HC_Topors 425 467 - -
Mibi02g0222 907 Coils Coil 155 199 - -
Mibi02g0222 907 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 495 568 IPR013083 -
Mibi02g0222 907 MobiDBLite consensus disorder prediction 291 311 - -
Mibi02g0222 907 ProSiteProfiles Zinc finger PHD-type profile. 516 565 IPR019787 -
Mibi02g0222 907 SUPERFAMILY RING/U-box 424 473 - -
Mibi02g0222 907 MobiDBLite consensus disorder prediction 667 703 - -
Mibi02g0222 907 ProSitePatterns Zinc finger RING-type signature. 444 453 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0222 Mibi-ChrMibi02 2240572 2246814 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0222 425 470 C3H Transcription Factor Family AT2G39100 43.478 5.57e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi02g0222 PHD 4.7e-09 CL0390