Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0162 ATGGCAGACTCTCAGGGTGATTCGAAAACGTTCAGTGTTCGGATTGTGTCCATCGACTACTACATGGCACCGCCGATTCCAGGCCTGGATATCTGTTACAGCAGTTTCCATGGTGGGAAGGTGAATGAAGTTCCAGTTGTAAGGATATATGGTTCTACTCCAGCTGGGCAGAAAACTTGTTTGCATGTACATCGGGCTTTGCCCTACATGTATGTGCCGTGTGCTGATATATGTCTACAGTCAGATCAAGAAGATGTGTACACATATAAGGTATCTGCATCTCTTGAGAAAGCATTGAAGCTAAAAGGCAGCAGTGGTCTGACGAGACAACACGTACATGGCTGCAGCATTGTAAGAGCAAGGAGATTTTATGGCTATCATTCATCAGAGGAGTTATTTGTGAAGATATACCTATATTATCCACAGGATGTCTCCCGTGCTGCTAATCTACTATTGGCTGGTGCTGTTCTTGGCAAAAGCTTACAGCCATATGAATCACATATTCCCTTCATTCTTCAGTTTCTGGTTGATTATAACTTGTATGGCATGGGTCATCTGCACTTGTTAAAGATGAAGTTCCGCCTTCCTATGCCAGATTCTTCCCACTTCAATAATCAACAGACAGGGGCTGATACAGATGGTGATGCGTGTTTAGGGTCAGCAGTGTGGACATCATCAATGGTCTCATCTGATTGGATGTGGCAACTTCCTAGTGAATTGGATGCTTCATCAAATCATGAGGCTCATTGCCCCAAACGTCAAAGCACATGTGAACTGGAGGGCGATGCTTCTGTAGATGAGATTCTTAACCAGCAGTTTAAAATGTATTCATCTCTCTCACAAACCCGAACAGACGTTCAAATGGTTCAGTCTCTTGTACCAATCTGGAAGGAGCAGCAAGAAAGGATTGGGATTTATGAGGATACTATACCTCCTGATCCTGGGAAGCCACTGCCAGAAGTTGTTATGAGAAGTCTTTCTGCTGGTCTTGACTTTGAGAAAAAGTTTGTTGAAATGTGCTGTGAGGCTGAAACATGTGGATCTTTTACTTCCTTTGAGGAGTTGAGAGAAACAGATATAATAGGTTCAGCATCGCCGCCGGCTTCACTATGCGAATATGCCAAATTGCATGAAGAAGGGACTGAGGCAAATCTCAGATTGTTGACTGTTGATGAAATGCAACCATCTGAGATGACTGGAATACAGGACATAAAGGTGGCAGATAAGGAAGCATTGAATCTCTTAAAGTGGCTTGCAACTTCTCAAGCTGCTGAGGACATCAACTCAGATGATGAACTTCTTCGTGAAACCATTTTGAGTCCCTTGTTACCTGCTACAACAATTGATAAGGTGCTGGAAAAAGCTACTATGGATTATGAGAGTGAGTCCCAAAAGGAGTGTCAAGATATTCTTGATTCCATTGATGACCAATGTCAATTGGAGTCATCAAAGAGAAAGCCACCTTTTCTCTCAAATTTTGATCATCCTGTTGAGTATTCACTGAACAATATGATTCCCCAAGTTGATGGTTCTGCTGATGAAGAGTTTTCAAGTCCAAATGCCGATTCAGCTGGAATTTCATTTTCACTTGACGAAAAAGGTGAATCCAAAAGGTCTTCTAAACACAGTATACTGCAACATACTAGAACAAATACTAATTGCAAAGATAACAGGAATAAAGTTTGGGGCTCTTTGCCATTTTCAATGTCCTATAACAATTTTGAACATGCCAGCTTACATGTTGCCCATCCATCTGGAAGGGAAACTGGCGAACCTGTTGGCTCAGTTTATTTGGCCAGAAATGAGATAGAAAATAATGGCATTAAGGATGGGGATCAGGGTGCATCAGACTTAGAAGAAGTACATACACTGGATAATTGCTCTGTGCGGGACTTGATGAGAAGAAAGAGATGTTATCGAGTTGAGCAAAGTGACTGTGGATCTGAAATAGTTAAAAAACTACTTTTTGATCAGGATGAAAAGATGAAAACTGATGAAGGAGAAACAGAACTGAAAATGAGAAATCATGATTTCGTGTGTAGGAAATCACCCCTTGTAGTTTGCAGTCATACTGGACCGAGTTTCTGTGAGCTGAAGAAGTTTCACTCTACCAGTTCTTCTGATCTCCCAGAGATTTCCTGTGGTAAAAAGTTTAAGGTTGACTCAACATATGTACAAACTGACAAGTGTCAACATACTGACATTGCAGCCATAGGTAGTGTACAAAGCTCTTCTATTGAGAATTTAGGTTCTGGAAGAGATAATTGTGAATGTGAATGTTCTCATGGAAGCAAAACTTACGAGCAACATGGTCAGACAAAGTTATGTGAGAATGCTGCGGTTGTGAATACTGCAACTGACATTCAAGCATTGCAATATGCAAAAAGTGATGAGAAAAAACCTGAAGAGAATTTGGGTTTTTGTGAGACTGTTGGCAAGGAACCCTTTGCCAATGACATTATGGGTAATCACATGAGGTTAACCCTTGGCAGGACGGCTTCCATGGCAGTGAAGGCGCTGAATGATGTTATTCCTGCTTCTGCTGGTGGTTCCCTGAAAGAGATGGAAACTTGGAACAAGCATGTTGCCAATAATTCCTTTGCTCCTAAAGGGAATAAGGTCTTGGGTTTTGCAACTTACTATCAAAATGATGGCTCTCATCTATGCTTATTGAAACCGAAAATTTTGCCTCCTTCTGGGAGTAGTGTTCAGAGATGGCTACTTTTTGATGAGAGAGATAAAATGGTTCAAGAAACTGATGCAAAGGAGAAGCATTTGCCTAAGTGGAATACAAGACCTTGTCTTATGTCTAAACATGTCCATGATGTTAATTCTGAAATGAAGACCCCATGCATCAGTGGTGGACGAATGAATCCAATCAAAACATGCTTAGACAACTTGCAAGATACTTCTCAGATATCAGGCCCTGATGTGAAATCAAGGTCTACTCCTCTGAGTCAAATTGGATTTCGTGATCCTGCAAGTATTGGCTGTGGACAGCAATTAACATTACTCAGTATAGAGGTTCTTGCAGAATCAAGAGGAGAACTTTTACCTGATCCCCGGTTTGATGCCATCAACATCGTTGCTCTCGGTTTTCAAAATGACAGTGACACTATTGTTGATGTTCTTGTCCTTTTGCATTGTAAACTAGAACCTTGTCAAAGAAATTTTGGGGGTCTATCTGGCTGCAAAGTGATGGTCTTCAAGGACGAAAAGTGCTTGCTAAAAAAATTTATCAAGATTGTGTCTTCATCTGATCCAGATATTCTAATGGGCTGGGATATCCAAGGCGGTTCTCTTGGTTTTTTAGCAGAAAGGGCTTTGCATCTTGGATTAGGATTACTTAATAGTTTATCTCGTACTCCATCCGAATCTTGGATTACTTTGGATTATGCTGAAACTTCTGACAAAGATATGTCAGAAACTGCCATTCCTGATATATCTAGTGCAGATGATGTACAAGAAAGTTCAATAATTGAGGATGAATGGGGACGAACACATGCCAGTGGAGTACATGTTGGTGGAAGAATTGTTCTTAATGTGTGGCGACTTATCCGTGGAGAAGTGAAGCTCAATTTATACTCAGTTGAAGCAGTGGCTGAAGCTGTATTGAGGAGGAAAATTCCTTCAATTCACAACAAGGTTCTGACCAAATGGTTTTCTGGTGTTCCTGGGAGAGCAAGATATCGGTGTGTCGAATATATTACTGAGAGGGCAAAGCTGAATCTTGAAATATTAAGCCAACTTGATATGGTGAATAGAACATCAGAACTTGCCCGTATTTTTGGTATAGATTTTTTTTCTGTTCTCTCCAGAGGTTCCCAATATCGTGTTGAATCAATGTTTCTGAGGTTGGCACATACGCAAAACTATCTCGCCATTTCTCCTGGGAATCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTGCCCCTTGTGATGGAACCAGAGTCAGGATTTTATGCAGACCCGGTTGTAGTATTTGACTTTCAGTCATTATATCCAAGCATGATAATCGCATACAACCTTTGCTTTTGTACGTGCCTTGGCAAAGTTGTGGCAACAAAAGCAAACACACTCGGAGTTAGTTCATTTTCACCAGAGCATCATGTTTTGCAGGATTTAAAAGATCAGATCTTGTTTACTCCAAATGGTGTTATGTTTGTTCCTTCCAAGGTTCGTCGAGGTATACTACCGCGCTTGCTGGAAGAAATTTTATCAACTAGGATAATGGTGAAACAAGCAATGAAAAAGTTGGCTCCTTCACAGCAAGTCCTTCAGCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTTATATCAAATGTGACATATGGCTACACTGCTGCTGGATTTAGTGGTCGTATGCCTTGTGCCGAGCTTGCAGACACTATAGTTCAATGTGGCCGTTGCACACTGGAAAGGGCTATATCATTTGTAAATCAACACAATAAGTGGAACGCAGAAGTAGTTTATGGAGATACTGATAGCATGTTTGTTCTCCTCAAAGGACGCACCATTAAAGAGTGTTTCCAAATTGGGGGCGAGATTGCTTCTGCTGTCACTGCTATGAACCCTAGTCCGGTCACCCTGAAGTTGGAGAAAGTTTATCAGCCTTGTTTCCTCCTTACTAAGAAGCGTTATGTTGGTTATAGTTATGAAAGCCCTGATCAAGTTGAGCCAGTTTTTGATGCGAAAGGTATTGAGACAGTTCGTAGAGACTCATGTGGTACAGTTGCAAAGATGATGGAACAGTCTTTGAGGCTCTTTTTTGAAAATCAGGATTTGTCGGAGGTGAAAAGTTATTTACAACGTCAGTGGAAGAGAATTCTTTCAAGCAAAGTGTCCATTAAAGATTTTGTTTTTGCTAAGGAGGTACGCCTAGGTAGCTATAGGGCGAGGACATCATCATCCTTACCTCCAGCTGCCATTGTTGCCACAAAGGCAATGAGGTTTGACCCTAGGGCAGAACCACGTTATGCTGAGAGAGTACCTTATGTTGTAATCCATGGAGAGCCTGGAGCCCGTCTGGTTGACATGGTTGTGGATCCACTGGAAGTTTTGGCACTTGATTCCCCATTCAGAATAAATGACTTGTATTACATTAATAAACAAGTAATACCTGCTTTGCAGCGGGTGTTTGGGCTTGTTGGTGCTGACCTGAACCAATGGTTTTTAGAGATGCCTCGTCCTTTTAAGGAAGCACGTGTAAAGAATCTCATTGCTCCAAATTCACATCGAATGAGAATTGACTCTTATTATATGTCAAAGCATTGTATACTGTGTGGCGGGTTGATTCAGGCTTCTGCACCTATATGCATTCAGTGTTCTGAAAATGGAGTGGCTGCTGCAACGGCTGTGATTAGTAAAACGTCAAAGTTGGAACAAGAGATGCAGCATCTTGTTGCTATATGTGACCATTGTGGAGGTGGAGATAAGCTTCTGGAAAGTGATGTAAAGTGCACGTCAATTTCATGCTCGGTGTTTTATGAGAGACGAAAAGTTCAGAAAGAACTACTAGCTATGAGCCATGTTGCTGCTGGCGAAGGCTTTTATCCTAAATGCATGGTCGAGTGGTTCTGA 5586 0.4151 MADSQGDSKTFSVRIVSIDYYMAPPIPGLDICYSSFHGGKVNEVPVVRIYGSTPAGQKTCLHVHRALPYMYVPCADICLQSDQEDVYTYKVSASLEKALKLKGSSGLTRQHVHGCSIVRARRFYGYHSSEELFVKIYLYYPQDVSRAANLLLAGAVLGKSLQPYESHIPFILQFLVDYNLYGMGHLHLLKMKFRLPMPDSSHFNNQQTGADTDGDACLGSAVWTSSMVSSDWMWQLPSELDASSNHEAHCPKRQSTCELEGDASVDEILNQQFKMYSSLSQTRTDVQMVQSLVPIWKEQQERIGIYEDTIPPDPGKPLPEVVMRSLSAGLDFEKKFVEMCCEAETCGSFTSFEELRETDIIGSASPPASLCEYAKLHEEGTEANLRLLTVDEMQPSEMTGIQDIKVADKEALNLLKWLATSQAAEDINSDDELLRETILSPLLPATTIDKVLEKATMDYESESQKECQDILDSIDDQCQLESSKRKPPFLSNFDHPVEYSLNNMIPQVDGSADEEFSSPNADSAGISFSLDEKGESKRSSKHSILQHTRTNTNCKDNRNKVWGSLPFSMSYNNFEHASLHVAHPSGRETGEPVGSVYLARNEIENNGIKDGDQGASDLEEVHTLDNCSVRDLMRRKRCYRVEQSDCGSEIVKKLLFDQDEKMKTDEGETELKMRNHDFVCRKSPLVVCSHTGPSFCELKKFHSTSSSDLPEISCGKKFKVDSTYVQTDKCQHTDIAAIGSVQSSSIENLGSGRDNCECECSHGSKTYEQHGQTKLCENAAVVNTATDIQALQYAKSDEKKPEENLGFCETVGKEPFANDIMGNHMRLTLGRTASMAVKALNDVIPASAGGSLKEMETWNKHVANNSFAPKGNKVLGFATYYQNDGSHLCLLKPKILPPSGSSVQRWLLFDERDKMVQETDAKEKHLPKWNTRPCLMSKHVHDVNSEMKTPCISGGRMNPIKTCLDNLQDTSQISGPDVKSRSTPLSQIGFRDPASIGCGQQLTLLSIEVLAESRGELLPDPRFDAINIVALGFQNDSDTIVDVLVLLHCKLEPCQRNFGGLSGCKVMVFKDEKCLLKKFIKIVSSSDPDILMGWDIQGGSLGFLAERALHLGLGLLNSLSRTPSESWITLDYAETSDKDMSETAIPDISSADDVQESSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAEAVLRRKIPSIHNKVLTKWFSGVPGRARYRCVEYITERAKLNLEILSQLDMVNRTSELARIFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYADPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVATKANTLGVSSFSPEHHVLQDLKDQILFTPNGVMFVPSKVRRGILPRLLEEILSTRIMVKQAMKKLAPSQQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADTIVQCGRCTLERAISFVNQHNKWNAEVVYGDTDSMFVLLKGRTIKECFQIGGEIASAVTAMNPSPVTLKLEKVYQPCFLLTKKRYVGYSYESPDQVEPVFDAKGIETVRRDSCGTVAKMMEQSLRLFFENQDLSEVKSYLQRQWKRILSSKVSIKDFVFAKEVRLGSYRARTSSSLPPAAIVATKAMRFDPRAEPRYAERVPYVVIHGEPGARLVDMVVDPLEVLALDSPFRINDLYYINKQVIPALQRVFGLVGADLNQWFLEMPRPFKEARVKNLIAPNSHRMRIDSYYMSKHCILCGGLIQASAPICIQCSENGVAAATAVISKTSKLEQEMQHLVAICDHCGGGDKLLESDVKCTSISCSVFYERRKVQKELLAMSHVAAGEGFYPKCMVEWF 1861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0162 1861 ProSitePatterns DNA polymerase family B signature. 1493 1501 IPR017964 GO:0000166|GO:0003676
Mibi02g0162 1861 CDD DNA_polB_zeta_exo 999 1248 - -
Mibi02g0162 1861 CDD POLBc_zeta 1274 1723 - -
Mibi02g0162 1861 PRINTS DNA-directed DNA-polymerase family B signature 1435 1447 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mibi02g0162 1861 PRINTS DNA-directed DNA-polymerase family B signature 1491 1499 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mibi02g0162 1861 PRINTS DNA-directed DNA-polymerase family B signature 1326 1339 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mibi02g0162 1861 FunFam DNA polymerase 1568 1737 - -
Mibi02g0162 1861 Gene3D - 1033 1309 IPR036397 GO:0003676
Mibi02g0162 1861 Gene3D DNA Polymerase, chain B, domain 1 29 195 - -
Mibi02g0162 1861 Gene3D Helix hairpin bin 1392 1452 - -
Mibi02g0162 1861 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 6 1853 IPR030559 GO:0006281|GO:0016035|GO:0019985
Mibi02g0162 1861 SUPERFAMILY Ribonuclease H-like 27 1272 IPR012337 -
Mibi02g0162 1861 Gene3D Palm domain of DNA polymerase 1312 1557 IPR023211 -
Mibi02g0162 1861 Pfam DNA polymerase family B, exonuclease domain 55 194 IPR006133 -
Mibi02g0162 1861 Pfam DNA polymerase family B, exonuclease domain 1002 1129 IPR006133 -
Mibi02g0162 1861 SMART polmehr3 1000 1505 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mibi02g0162 1861 FunFam DNA polymerase zeta 1393 1452 - -
Mibi02g0162 1861 MobiDBLite consensus disorder prediction 509 545 - -
Mibi02g0162 1861 FunFam DNA polymerase 30 195 - -
Mibi02g0162 1861 Pfam C4-type zinc-finger of DNA polymerase delta 1760 1833 IPR025687 -
Mibi02g0162 1861 FunFam DNA polymerase 1009 1309 - -
Mibi02g0162 1861 Pfam DNA polymerase family B 1267 1715 IPR006134 GO:0000166|GO:0003677
Mibi02g0162 1861 SUPERFAMILY DNA/RNA polymerases 1313 1726 IPR043502 -
Mibi02g0162 1861 Gene3D - 1568 1731 IPR042087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0162 Mibi-ChrMibi02 1686603 1700560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0162 39 194 Core DNA Replication Machinery Family AT5G63960 26.087 1.21e-09 61.6