LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi02g0074	ATGGCGAGCCAGGTGGTCAAAGTGAAGAGGCAGACGCTAGAGGCATGCATGACATGCCCTCTCTGTCTTAAACTGTTGAAGGACGCTACTACCATCTCTCTCTGCCTTCATACGTTCTGCAGGAAATGCATATATGAGAGATTCTCAGATGAGGAGGCGGATTGCTGTCCAGTATGCAATATTGATTTAGGCTGTCTTCCGGTGGAAAAGCTGAGGCCAGATCACAATTTGCAAGATATTAGAGCCAAAATATTCCCTTTAAGACGAAGAAAGATTAAGGCCCCGGAGGCAATACCTTCAGTACCTCTGCCAGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTGATTTCTGCTCCTAAAGTTACAATGCAGACTGGCTTCACGGGTAAGAGAACAAAAACTGGTACAAGAAAGGCTGCTGCTTTACGCGGATGCAATTTTGCTGTTCATGAATCCATAAAGAAAGAAGAAGTCTATACTGAGGATAACCCAGATTCTTCTACGACTGGGCCTTCTAAGAAGAATAGGCCTAATGAATATACAGAGAACAATGTGAAACTTCCAGAAGGTAAAGTTGATCTCTGGACACCCTTGAACTGTCTTGTTGAAGCTGCCAACAGGACAAAATCCTCAAAGTTGACTTCGCAAGGCTTGTCTGTTGCCAAAACGGAGCCTCCAACCACTCCTAATGGTGGGATAAGCATGCCTGAAATTACAACCAAATCAGAGCCACCTGCCACTGCCCATAGTGAATTACGCATTCCTAAAACCAAAAATAAGGATAATGGTCATAAAGCAAAATTTGGTGATGACAAGGATCAAAATGCTGTGCCTCCAGGACAAGTGAAGCGGAGAAAGGTGCGTCCAGCTGGTCAGAAAAGAAATGCAGCATCTGAGACTTCTACCTCAGCCCAAGGTATGCTAGATGCAGCTGGGGGCAGGTGTAACAGAGAAAACTGTCCTATTTGGTTTTCATTGGTTGCTTCAGAAGGCCAGAAAGGAGATGTTCCCTTGCCGCAGATTTCAGCATGCTACTTAAGAATAAAGGATAGTACTGTGCCCGTCTCCTTTATTCAAAAGTACCTTGTTAAGAAACTTAATCTTGCCAGCGAAGCAGAGGTGGAAATAATGTGCCATGGTCGACCGGTGCTGCCATCTTTGCAACTGCATAACTTGGTCGATCTCTGGTTCAGGACTGCTTCGTCCTCTAAAAAGCTTCCTGCTTCTGTTGGCTCTTCAGCCAAGGACTTCGTTATGGTTTTATCATATTCTCTGAAGGCCCTCCCTCCTTAG	1296	0.4491	MASQVVKVKRQTLEACMTCPLCLKLLKDATTISLCLHTFCRKCIYERFSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPLRRRKIKAPEAIPSVPLPAKRKERSLSSLVISAPKVTMQTGFTGKRTKTGTRKAAALRGCNFAVHESIKKEEVYTEDNPDSSTTGPSKKNRPNEYTENNVKLPEGKVDLWTPLNCLVEAANRTKSSKLTSQGLSVAKTEPPTTPNGGISMPEITTKSEPPATAHSELRIPKTKNKDNGHKAKFGDDKDQNAVPPGQVKRRKVRPAGQKRNAASETSTSAQGMLDAAGGRCNRENCPIWFSLVASEGQKGDVPLPQISACYLRIKDSTVPVSFIQKYLVKKLNLASEAEVEIMCHGRPVLPSLQLHNLVDLWFRTASSSKKLPASVGSSAKDFVMVLSYSLKALPP	431

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi02g0074	431	ProSiteProfiles	Zinc finger RING-type profile.	19	60	IPR001841	-
	Mibi02g0074	431	PANTHER	E3 UBIQUITIN PROTEIN LIGASE DRIP1	1	427	IPR044807	GO:0004842
	Mibi02g0074	431	MobiDBLite	consensus disorder prediction	210	311	-	-
	Mibi02g0074	431	MobiDBLite	consensus disorder prediction	210	247	-	-
	Mibi02g0074	431	MobiDBLite	consensus disorder prediction	164	183	-	-
	Mibi02g0074	431	ProSitePatterns	Zinc finger RING-type signature.	35	44	IPR017907	-
	Mibi02g0074	431	MobiDBLite	consensus disorder prediction	157	186	-	-
	Mibi02g0074	431	SMART	ring_2	19	59	IPR001841	-
	Mibi02g0074	431	SUPERFAMILY	RING/U-box	13	84	-	-
	Mibi02g0074	431	Gene3D	-	309	408	-	-
	Mibi02g0074	431	Pfam	Zinc finger, C3HC4 type (RING finger)	19	59	-	-
	Mibi02g0074	431	MobiDBLite	consensus disorder prediction	254	273	-	-
	Mibi02g0074	431	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	3	111	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi02g0074	Mibi-ChrMibi02	970181	974513	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi02g0074	5	350	C3H Transcription Factor Family	AT2G30580	44.077	6.29e-86	264