Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0054 ATGGGTGATCACTGTTCGGGGAAGAGAAGGGAAAATTACGAGGCCCATCAAGCAGAACTCTCGTTTGGCTCCCAACCTTTTTTAGTCACAGCCGTTAAGATGGAAAGAATGACTGAGGAAGTGGAAGATATTGGAAGTGCTTCAAGTGGTTCGTTTATTGATGATTCAGATGATGGGTCTTCAACTTCTGAATTAGATGACAAAGCACATCTTGAGGAACCTTTGACTGAGGAAGACATAGAAGGACTGATTGCTGAATTGTTAGAAGTTGAGGGCAAGGCTGCAGAGGCTCAAGAAGCTCTGGAGGAAGAGTCTCTTAACAAAGTAGAGATTGAGGTTAGGCGAGAGTTGGAGCAAACTCTTCAAGGCAATGATTTGGAATCTGCCGTTGCAGATGAGATGACTACTCTAAAAGAAGAGTGGGAAGCTGTTTTGGATGACCTTGAGACTGAAAGTGCCTACTTGCTGGAACAACTTGATATGGCTGGTGTTGAGCTGTCAAGGCTGTATAAGTGGATAGAAAGGGAGGCTCCTAATGGTTGTTTGACTGAAGCTTGGAGAAAGAGGAATCATTGGGTTGGTACTCAGGCAACTGAAGAATTTGTTGAGTCAGTTGCTGATGCTGAGAAGTATCTACAAGTCTACAGACCTGTTAGAAGACGTCATGGTAAACTGTTGGAAGAGGGCGCCAGTGGATTTCTTCAAAAAAAACTTGATGAATCAAGTGAACCAGTAAAGGAAAAAACTGAGGTAGATTGGGGTATGTTTAACAAAATATTTCACGATGGTGGCGATGCTGATGCTTCATTTGGCAGTAAGAATTGGGCTTCTGTTTATTTGGCCAGTACACCACAACAAGCTGCACTGATGGGTCTTGAATTTCCTGGTGTTAATGAGGTGGAAGAGATCGATGACATTGATGGCACTCCTACCGATCCATTTATTGCAGCTGCAATTGCAAATGAAAAAGAAATAGAACTTTCTGATGAACAGAAGAGGAAATTTATAAAGGTCAAAGAAGAAGATGATGTAATTGTTGATCGGGAGCTCAAGATCCATTTAAAAAGGAGATATCAAAAGAAAAAAAAACAGAGGGAAACTATAGAGAGTCTCAAACAGAAGTCTTCATCTTTAGATTGTTCTAATGCTGATATGAAGGAAAAAACTTGTGATGATGGCGAAAAGGCGACTAGCAATGAAGTTGGATGTCTGAATATGAAAAACAATAGCATTGAAGATCTGGGTAGCAGTTGTGACTTTGACAAAGTAAACTCTATGAATATTGGCCCTTTGTCAGAGCTCTCTAAATCTTCATTGCCTGATGTTGAACACAGAGGTACCAAGCGACTAAATGGTGGTGAAGAGAACAGTGATACAAAAAAGAGTCGGACTGTCACTATCAACAGCGGTGATGAAGCTGATGTGGTTGAAAATAATATAGTTAGGAATACAAATGTGTTAGAGGATCAGTCTGAGATGCAAGGCACCTGTACCAGCATTGCTGATAGTCTTCCTTCTCAGCATCTGGATAAGAAATTTTGCTGCACTGTTTGTGATAAAGTGGCACTTGAAGTTCATGAACATCCTCTTTTGAAAGTGATTATTTGCAGGGATTGCAATTCTTTAATGGAAGAAAAGAAACGCGTGAAGGATCTCAATCCTGATTGCTCTGAGTGTTATTGTGCATGGTGTGGAGGAAGCAATGAATTAATTAGCTGCAAGTCATGCAATATGTTATTCTGCAACAACTGCATAAAGAAGAATCTTGGTGCAGAATTCCTTTCTGAAGTTCAGGCCACTGGTTGGCATTGTTGTTGCTGTCACCCAAATCTCTTGCAAAGACTATCATCACAACTAGATAAAGCCGTGGGATCCGTTGAAACATCAGTTTCCAGCTCTAGTAGTGATTCAGATGATTCTCATGCAGATATTAATGTTAGAATCAGTTCTAAGCGGAAGCGCAAAAAGAAGATTAGGAGGATCCTTGATGATGCTGAATTAGGAGAGGAAACGAAAAGGAAAATTGCAATAGAAAAGGAGCGTCAAGAACGTTTGGAGTCTTTGCGAGTGCAGTTTTCTGCCTCGTCTAACATCAAGAGCTCTTCGGGATATAACGGGAATTTATCTGAAGGTGCTAATTCTGAAGTACTTGGTGACGCATTAACAGGCTATGTAGTGAATGTTGTGAGGGAAAAAGGTGAAGACGCTGTCAGAGTTCCTCCTAGTATTTCAACTAAATTGAAAGCGCATCAGATTGCAGGAATAAGATTTATGTGGGAGAATATAATACAGTCAATCAGAAAAGTGAGGTCCGGGGATAAGGGTCTTGGTTGTATTCTTGCTCATACTATGGGCCTCGGTAAAACCTTTCAGGTGATAGCTTTCTTGTACACAGCAATGAGAAGCACTGATCTGGGGTTAAGAACTGCACTTATTGTCACACCTGTTAATGTGCTGCACAATTGGCGGCAAGAGTTTATCAAATGGAGGCCATCAGAAGTAAAACCACTTAGGGTCTTTATGCTGGAAGATGTATCAAGGGATAGGAGAGCAGACATACTTGCGAAATGGAGAAACAAAGGTGGCATATTTCTGATTGGCTATACTGCTTTTCGAAATCTTTCTTTTGGAAAACACGTGAAAGATCGACATACTGCCCGAGAAATTTGTCATGCTTTACAGGATGGACCGGACATACTTGTTTGTGATGAAGCCCATATGATAAAGAATATAAAGGCTGACATAACCCAAGCTTTGAAACAAGTAAAATGCCATAGAAGAATTGCACTGACTGGATCACCTCTTCAGAACAATCTCATGGAGTATTTTTGTATGGTTGATTTTGTGAGAGAAGGTTTTCTTGGAAGCAGTCATGAATTTAGGAATCGCTTCCAAAATCCTATAGAGAATGGTCAACATACTAATTCTACGCTGGATGATGTGAAGATTATGAACCAGAGGTCTCACATCCTCTATGAGCAATTAAAGGGCTTTGTTCAACGAATGGACATGAATGTGGTGAAGAAGGATTTGCCTCCAAAAACTGTCTTTGTTATAAGTGTCAAGCTTTCTCCCCTGCAGAGAAAGCTGTACAAGAGATTCCTCGATGTGCATGGATTCACAAATGACCGGGCTTCCAATGAGAAAATGAGAAAGAGGTGTTTTTTTGTTGGGTACCAGGCATTAGCTCAGATATGGAACCATCCTGGGATCTTGCAATTGACAAAAGAAGACAAGTACTATGTAAGACAAGAAGAAGCAGTTGAGAATTTTCTTGTGGATGACAGCTCTAGTGACGAAAATTCAGATTATAACGTACCTGTGGGAGAGAAGGTTAGATGTGCAAATGAGTTTCTGCCAAAGAAAGATGAGAACGGCTTTTTTCTAAAGGGTTGGTGGAATGATCTTCTGCATGAAAAAAATTATAAACAACTTGATTACAGTGGTAAAATGGTTTTGCTCCTGGACATACTAACCATGAGTTCTGATGTTGGTGACAAGGTGTTGGTTTTTAGCCAGAGCATACCGACACTAGACCTCATAGAACTTTATCTATCAAGATTACCTAGACGAGGCAAATATGGCAAACTTTGGAAAAAGGGAAAAGACTGGTATAGGTTGGATGGAAGGACAGAGAGCTCTGAAAGGCAAAAGATGGTTGAGAGGTTTAATGAGCCTTCCAATAATAGAGTGAAGTGCTGTCTTATTTCGACCAGAGCTGGTTCTTTGGGTATTAATCTCCATGCAGCTAATCGCGTCGTTATTGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCCATCTATCGAGCTTGGAGGTACGGCCAGAGAAAGCCTGTGTTTGCTTACCGATTGCTGGCTCATGGAACGATGGAAGACAAAATCTATAAGCGCCAGGTAACAAAGGAGGGCCTTGCTGCTAGAGTGGTTGACAGACAACAAGTGTACAGGACCATATCTAAAGAAGAGATGTTACATCTCTTCGAGTTTGGTGATGATGAAAACCCTGAGACATTAGCTGAACTGAGTCAAGAGAATGGGCATTCAGTGGAGCAGACATTACCACATTCAAATGGAACCAGCCTTTCTGATAAGTTCATGGAAAGCTTACTTAGCAAGCATCGTCCAAAGTGGATTGCCAATTATCATGAACACGAAACCTTATTGCAAGAGAATGAAGAAGAAAAGCTATCAAAAGAGGAGCAAGACATGGCTTGGGAAGTATACCGGAAAACATTAGAATGGGAGGAAGTGCAGAGAGTACCGCTGGGTGAATCGCTGCCTGTTCAAAAACCACAAGAACCAAATGCAGCATCCCCTGTATCAAAGACCCACAGCCTCTCACCAACAAGGTTGAGGAACAGTTTTGTAACACGCAAATGCACCAACCTTTCACACTTGCTGACGCTTAGAAGTCAAGGCACTAAATTTGGTTGCAGTACAGTCTGTGGGGAATGCGCCCAAGAGATCAGATGGGAGGACTTGAACAGAGATGCAAGAGCAGCAAGGTGA 4515 0.4142 MGDHCSGKRRENYEAHQAELSFGSQPFLVTAVKMERMTEEVEDIGSASSGSFIDDSDDGSSTSELDDKAHLEEPLTEEDIEGLIAELLEVEGKAAEAQEALEEESLNKVEIEVRRELEQTLQGNDLESAVADEMTTLKEEWEAVLDDLETESAYLLEQLDMAGVELSRLYKWIEREAPNGCLTEAWRKRNHWVGTQATEEFVESVADAEKYLQVYRPVRRRHGKLLEEGASGFLQKKLDESSEPVKEKTEVDWGMFNKIFHDGGDADASFGSKNWASVYLASTPQQAALMGLEFPGVNEVEEIDDIDGTPTDPFIAAAIANEKEIELSDEQKRKFIKVKEEDDVIVDRELKIHLKRRYQKKKKQRETIESLKQKSSSLDCSNADMKEKTCDDGEKATSNEVGCLNMKNNSIEDLGSSCDFDKVNSMNIGPLSELSKSSLPDVEHRGTKRLNGGEENSDTKKSRTVTINSGDEADVVENNIVRNTNVLEDQSEMQGTCTSIADSLPSQHLDKKFCCTVCDKVALEVHEHPLLKVIICRDCNSLMEEKKRVKDLNPDCSECYCAWCGGSNELISCKSCNMLFCNNCIKKNLGAEFLSEVQATGWHCCCCHPNLLQRLSSQLDKAVGSVETSVSSSSSDSDDSHADINVRISSKRKRKKKIRRILDDAELGEETKRKIAIEKERQERLESLRVQFSASSNIKSSSGYNGNLSEGANSEVLGDALTGYVVNVVREKGEDAVRVPPSISTKLKAHQIAGIRFMWENIIQSIRKVRSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSTDLGLRTALIVTPVNVLHNWRQEFIKWRPSEVKPLRVFMLEDVSRDRRADILAKWRNKGGIFLIGYTAFRNLSFGKHVKDRHTAREICHALQDGPDILVCDEAHMIKNIKADITQALKQVKCHRRIALTGSPLQNNLMEYFCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVISVKLSPLQRKLYKRFLDVHGFTNDRASNEKMRKRCFFVGYQALAQIWNHPGILQLTKEDKYYVRQEEAVENFLVDDSSSDENSDYNVPVGEKVRCANEFLPKKDENGFFLKGWWNDLLHEKNYKQLDYSGKMVLLLDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRLPRRGKYGKLWKKGKDWYRLDGRTESSERQKMVERFNEPSNNRVKCCLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEDKIYKRQVTKEGLAARVVDRQQVYRTISKEEMLHLFEFGDDENPETLAELSQENGHSVEQTLPHSNGTSLSDKFMESLLSKHRPKWIANYHEHETLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLPVQKPQEPNAASPVSKTHSLSPTRLRNSFVTRKCTNLSHLLTLRSQGTKFGCSTVCGECAQEIRWEDLNRDARAAR 1504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0054 1504 MobiDBLite consensus disorder prediction 62 77 - -
Mibi02g0054 1504 MobiDBLite consensus disorder prediction 39 77 - -
Mibi02g0054 1504 MobiDBLite consensus disorder prediction 438 461 - -
Mibi02g0054 1504 MobiDBLite consensus disorder prediction 1340 1360 - -
Mibi02g0054 1504 SMART ultradead3 743 964 IPR014001 -
Mibi02g0054 1504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1156 1324 IPR001650 -
Mibi02g0054 1504 Coils Coil 1383 1403 - -
Mibi02g0054 1504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 769 952 IPR014001 -
Mibi02g0054 1504 MobiDBLite consensus disorder prediction 1341 1360 - -
Mibi02g0054 1504 Coils Coil 80 114 - -
Mibi02g0054 1504 CDD SF2_C_SNF 1146 1287 - -
Mibi02g0054 1504 Gene3D - 720 1001 IPR038718 -
Mibi02g0054 1504 Gene3D - 1012 1362 IPR027417 -
Mibi02g0054 1504 PANTHER RAD54-LIKE 60 1501 IPR044574 GO:0016887
Mibi02g0054 1504 Coils Coil 354 374 - -
Mibi02g0054 1504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1007 1347 IPR027417 -
Mibi02g0054 1504 MobiDBLite consensus disorder prediction 1433 1449 - -
Mibi02g0054 1504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 736 1001 IPR027417 -
Mibi02g0054 1504 Coils Coil 131 158 - -
Mibi02g0054 1504 CDD ADDz_ATRX 511 609 - -
Mibi02g0054 1504 SMART helicmild6 1179 1276 IPR001650 -
Mibi02g0054 1504 MobiDBLite consensus disorder prediction 431 461 - -
Mibi02g0054 1504 MobiDBLite consensus disorder prediction 365 384 - -
Mibi02g0054 1504 Pfam SNF2-related domain 770 1071 IPR000330 GO:0005524|GO:0140658
Mibi02g0054 1504 MobiDBLite consensus disorder prediction 1426 1449 - -
Mibi02g0054 1504 Pfam Helicase conserved C-terminal domain 1152 1276 IPR001650 -
Mibi02g0054 1504 ProSiteProfiles ADD domain profile. 503 635 IPR025766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0054 Mibi-ChrMibi02 739277 764544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0054 811 1329 RAD5 or RAD16-like Gene Family AT5G22750 25.086 1.38e-29 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi02g0054 SNF2_N 2.6e-50 CL0023