Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0044 ATGTCATCCAAACTTCAAGCGTCTCCATTGTCGTCCAAGCAGATCGTGTATAACACAACCAAGTGCAGATATATTTGGTACTGCCTTTGTAAGAGGTTACTAATGGGGACAGAACTCATGAGAACATGTGTTCAAGAAGAGAATGATGAGTTTCCATCAGTTCCACCTGGATTTGAGTTATATACATCTTCCTCACTGAATAAGGGGGAAGGCATTGAGAAACAAAATGATAAAAACATGATTAGTTTTTCAGACTCTACAAGTGTTTCTAATTGTAAATTACAGTCAGTTCAGGCTAAAACTGATGTTCAAGTTAGTAATACTGCAAAGGTTCCCAGGTCCCTTCGACGGAGACGATGGATCAACTATGGACGGCATGATAATTGTTCAGAGGAAGGCTCTGATTCTGAGCGGCTTGATCAAAATTTTTCCTCAGTACCTTGTCTTCCTAAGGGAGTTATCCGTGGATGTCCAGATTGCAGCAATTGCCAAAAGGTTATTGCTAGATGGAGACCAGAAGAAGCTTGCAGGCCCACCCTTGAGGACGCTCCTGTTTTTTACCCAACTGAAGAGGAGTTTCAAGATACAATGAAATATATAGCAAGTATTTGCTCCAGAGCAGAACCATATGGCATTTGTCGCATTGTTCCCCCCTCATCATGGAAGCCACCTTGTCCTCTTAAGGGAAAGACTATATGGGAGGGTTCTAAATTTACTACTCGAGTTCAGAGGATTGATAAGCTTCAGAATCGTGATTCAATGAGAAAGATGCCAAGGATTCATTTTAATACTAGACAGAAAAGGAAAAGATGTCATAGAATGGGATTGGATAATGGCAGTAATAGAGGACCTAATGTAGGATTTTGTGAGATTGAAAGGCCCTTTGGGTTTGAACCTGGCCCCGAATTTACTTTGGAATCATTTCAGAGATATGCAGATGAATTTAAGGCCAGATACTTCAGAAAGAATGAGGATATATCTATTATGGTAGGTAGCTCAACGATGACAAAAGGATGGGAGCCTTCTGTGGAGAACATAGAGGGTGAATATTGGCGGATGGTGGAGAGACCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGACCTGGAAACTGGGGTTTTTGGGAGTGGTTTTCCCAAAAAGCTTAGTGAAGGTGGTTCTGATCCACAAAAAGAGTACACAAACTCTGGCTGGAATTTAAATAACTTTGCTAGGCTTCCTGGATCTCTACTTTCATATGAAAGTAGTGATATATCTGGTGTCCTTGTGCCCTGGCTGTATATAGGAATGTGCTTTTCTTCCTTTTGTTGGCATGTGGAGGATCACCATTTATATTCATTGAATTACATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTACCCGGTAGAGATGCTTGCAAACTGGAAGAGGCCATGAGAAAGCATTTGCCGGACCTTTTTAAAGAACAACCTGATTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCTTCTATCCTTAAGTCTGAAGGAGTACCTGTCTATAGGTGTGTCCAGAACCCTGGAGAGTTTGTTCTGACATTCCCTCGAGCTTATCATTCTGGGTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTTAACGCAGCTCCAGTTGACTGGCTGCCCCATGGGCAGATTGCCATTGAGCAATACCGGGAGCAAGGACGCAAGACTTCTATATCTCATGATAAACTGTTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCTCTGTGGGAGCTTAATCTGCTGAAGAAGAATACTTCAGACAATCTAGGATGGAAAGATGTATGTGGAAAAGATGGTGTTTTAGCAAAAGCGCTCAAGACACGCGTTGAGATGGAACAAGTAAGGAGGGAATTTCTCTGCAATTCTTCTCAGGCATTGAAAATGGAGAGCAGTTTTGATGCCACAAGTGAAAGGGAATGCAGTGTTTGCTATTTTGATTTACACTTATCTGCTGCTGGTTGCCATTGTTCCGCAGACAGATATGCTTGCTTGGATCATGCAAAGCAGTTCTGTTCATGTGCTTTGGATTCCAAATTCTTCCTCTTTCGTTATGATATTAGTGAATTATTTATCCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTATACAGATGGGCAAAATTAGATCTTGGGCTGGCACTAACTTCTTCTATATCAAAGGAAAAAAGCCAATGTAGTAACTTAATTCAATCTTCGAAGGAAACAATGCTTCACAAATTGAGATTAGATTCCTCAAATATGTCTGGTTCTTCTTGTGGCACCATGCTTAAAGAGATGGCATTGCACCCGTCAGTTGTCTCTATTGAAGATTCTCATTTGATAGGTGAGAATCTGATGAATTTTACTAAAAGCATTGAGATGACTAGTCATGATAGATATTCAGAGAAGGAATTAATTATTTGCAAATCTGCTGCCGAGAACCCTGTTCATCAGTTGCCTGCAGGGGACACTACATATTCTTTACCCCCTCCTTTAGCTGAACATGGACCTAAGAAAACTCCTTATGGGCATGATAATGTTATACTTCTCAGTGATGATGAAACCGATGAACCGAAGATGACAGAAACAGATAGCAAGAAGGAGCTTTCTCAAGGGCTTATAGGTTGTTGTGATAGACTAAACCCATGTAATCATAGAGAAGATCCAGACAGGACTGTCCCTGTCATAGATGCTGCTTTGATGGTTGGGAATGATGTGCCTCATGAAAATATGAGTTCTCATTCGACCTATCATTTGCATGTGAAGCAGGAACATGATATACTTAAGGGGGCAGTTTTAGATTCCACTCCAGTAGATTTTTCCTGCAATATTGGTTATGGTAGTGCAGAATCAGTCAGAAAAGTTCAGGCTTCTTCATCAGGAGAGAGTAGAGATCATTGTCTGGACTCTTCTGAGAGTTGTCCTCTGAATCTACAGCATTCTGGGACTGCCAAGCCTAAGATCGAGGACAACCATGAGAAGATTGGAGTATGTACTGCAGATAATGCTAGAGCTATGAATGGAAACCCGTCTTGCAACCCAAACAATTTGGGAAGATACTATCGTCAGAAAGGTCCTCGTATAGCCAAGGTTGTCCGGCGTATCAACTGCAATGTGGAGCCTCTAGAATTCGGAGTTGTGTTTGCTGGAAAGTCATGGTGCAGCAGTCGGACTATATTTCCAAAGGGATTTCGAAGCCGTGTAAGATATATAAATGTCCTAGATCCAACAAGTATGTGTTACTACATTTCAGAAGTTCTTGATGCTGGACGAGATGGGCCTCTGTTTATGATCCTCTCAAAGATCTTGCTGAGTTCTGCCATTGATTATATGATCAAAAGATTAGTAACCGGGATTAGAATCAATGTGTCCTTGGAACATTGCCCAAGTGAGGTGTTCATTCATCTTTCTGCCAGTAGATGTTGGGAACTGGTAAGAGAGAGAGTGAATCAGGAAATCACAAGGCAACATAAGTTGGGAAGAAAGGACCTTCCTCCTTTGCAGCCCCCTGGCAGCATTGATGGCTTTGAAATGTTTGGGTTTTCTTCGCCAGCTATAGTTCAGGCTCCATTAGATTCTGCTTCCTTCGAGACGGATTTGATGATACATCTTCCTTTTTTTCCCCAGGCTATTGAGGCATTGGATCAAAATCGTGTCAGTAAGGAATATTGGGATTCACGGCCCTATTCACGGGCCCTAGGGCAAATTCAGCAAATTTCACAGCCCAAAGAAAATGGTGCAAGTGCGGATAGGCTATTGGAGGGGGGAAACGTTCAAGGTGTCCACAGGAATGATGTCATGACTATGGGAATAGATGCAGTATTGAGGAGCCTGTTCAAAAAAGCCAATGAACAAGAATTGAACTCTTTGTGCAGCATTCTTTGTGACAAAAACAATACTGCGGTTGACGGCAGCCTAATTGTTCAACTTCTCAACGAAGAGATTGGCAGTCGTCCCAGATGA 3969 0.4218 MSSKLQASPLSSKQIVYNTTKCRYIWYCLCKRLLMGTELMRTCVQEENDEFPSVPPGFELYTSSSLNKGEGIEKQNDKNMISFSDSTSVSNCKLQSVQAKTDVQVSNTAKVPRSLRRRRWINYGRHDNCSEEGSDSERLDQNFSSVPCLPKGVIRGCPDCSNCQKVIARWRPEEACRPTLEDAPVFYPTEEEFQDTMKYIASICSRAEPYGICRIVPPSSWKPPCPLKGKTIWEGSKFTTRVQRIDKLQNRDSMRKMPRIHFNTRQKRKRCHRMGLDNGSNRGPNVGFCEIERPFGFEPGPEFTLESFQRYADEFKARYFRKNEDISIMVGSSTMTKGWEPSVENIEGEYWRMVERPTEEIEVLYGADLETGVFGSGFPKKLSEGGSDPQKEYTNSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGRDACKLEEAMRKHLPDLFKEQPDLLHKLVTQLSPSILKSEGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNAAPVDWLPHGQIAIEQYREQGRKTSISHDKLLLGAAREAVRALWELNLLKKNTSDNLGWKDVCGKDGVLAKALKTRVEMEQVRREFLCNSSQALKMESSFDATSERECSVCYFDLHLSAAGCHCSADRYACLDHAKQFCSCALDSKFFLFRYDISELFILVEALEGKLSAVYRWAKLDLGLALTSSISKEKSQCSNLIQSSKETMLHKLRLDSSNMSGSSCGTMLKEMALHPSVVSIEDSHLIGENLMNFTKSIEMTSHDRYSEKELIICKSAAENPVHQLPAGDTTYSLPPPLAEHGPKKTPYGHDNVILLSDDETDEPKMTETDSKKELSQGLIGCCDRLNPCNHREDPDRTVPVIDAALMVGNDVPHENMSSHSTYHLHVKQEHDILKGAVLDSTPVDFSCNIGYGSAESVRKVQASSSGESRDHCLDSSESCPLNLQHSGTAKPKIEDNHEKIGVCTADNARAMNGNPSCNPNNLGRYYRQKGPRIAKVVRRINCNVEPLEFGVVFAGKSWCSSRTIFPKGFRSRVRYINVLDPTSMCYYISEVLDAGRDGPLFMILSKILLSSAIDYMIKRLVTGIRINVSLEHCPSEVFIHLSASRCWELVRERVNQEITRQHKLGRKDLPPLQPPGSIDGFEMFGFSSPAIVQAPLDSASFETDLMIHLPFFPQAIEALDQNRVSKEYWDSRPYSRALGQIQQISQPKENGASADRLLEGGNVQGVHRNDVMTMGIDAVLRSLFKKANEQELNSLCSILCDKNNTAVDGSLIVQLLNEEIGSRPR 1322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0044 1322 SMART cupin_9 392 558 IPR003347 -
Mibi02g0044 1322 SMART fyrn_3 1047 1091 IPR003888 GO:0005634
Mibi02g0044 1322 Pfam F/Y rich C-terminus 1123 1191 IPR003889 GO:0005634
Mibi02g0044 1322 Gene3D Cupin 168 542 - -
Mibi02g0044 1322 Pfam F/Y-rich N-terminus 1047 1088 IPR003888 GO:0005634
Mibi02g0044 1322 ProSiteProfiles FYR domain FYRN motif profile. 1033 1091 IPR003888 GO:0005634
Mibi02g0044 1322 Gene3D - 1040 1196 - -
Mibi02g0044 1322 SMART fyrc_3 1122 1237 IPR003889 GO:0005634
Mibi02g0044 1322 SMART JmjN_1 182 223 IPR003349 -
Mibi02g0044 1322 Pfam JmjC domain, hydroxylase 425 540 IPR003347 -
Mibi02g0044 1322 Pfam jmjN domain 184 217 IPR003349 -
Mibi02g0044 1322 SUPERFAMILY Clavaminate synthase-like 306 585 - -
Mibi02g0044 1322 ProSiteProfiles FYR domain FYRC motif profile. 1118 1209 IPR003889 GO:0005634
Mibi02g0044 1322 PANTHER LYSINE-SPECIFIC DEMETHYLASE 175 1072 - -
Mibi02g0044 1322 MobiDBLite consensus disorder prediction 820 845 - -
Mibi02g0044 1322 Pfam C5HC2 zinc finger 648 697 IPR004198 -
Mibi02g0044 1322 ProSiteProfiles JmjC domain profile. 395 558 IPR003347 -
Mibi02g0044 1322 ProSiteProfiles JmjN domain profile. 183 224 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0044 Mibi-ChrMibi02 610072 620464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0044 35 1320 JUMONJI Transcription Factor Family AT1G08620 52.548 0.0 1202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mibi02g0044 JmjC 4.4e-46 CL0029