Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0025 ATGAATTGTTTCTCCTGTTTCACCTGCCAACGAAGTAAGAAAAATCTTGCTGCCGGAGACCTTGAAGCACAAGATCACCTTGCTTCCAAACCACCGGATAATGGAACCCAATGTCAGAGCCCCCCAATTCAGGCGCAGACATTCACCTTCCGGGAGCTTGCAATCGCCACCAGGAATTTCAGGCAGGAATGCCTGTTGGGTGAAGGTGGATTCGGACGAGTGTATAAAGGCACCATTCCGGCAACCGGCAAGGTGGTCGCCGTGAAGCAGTTGGACCGAAATGGGATGAATGTCGGCAAGGATTTTCTGACCGAGGTTGTGAGTCTGAGTCACTTGAACCATGAGAATCTGGTGAATCTAATTGGTTACTGTGTCGATGGGGATCAACGTCTTCTGGTGTATGAATACATGTCTGGGGGCTCTGTATATGATCGTCTTTTTGGGCAAGAGGAAGGCAGGTCTCCACTGGATTGGTTCAACAGAATGAAAATAGCGTCGGGAGCAGCTAGAGGACTAAAGTATTTGCATGACAAGGACATTGTTTACAGGGACTTGAAATCCTCGAATATATTGCTGGATGATAATCTTAACGCAAAGCTTTCTGATTTTGGGCTCAACAAGCTTTCCGAAGGAGACAAGACAAATCTTATATCTCCCGGAGTTACGGGCACTTATGGCTACTCCGCTCCCGAGTATACTAGGACCGGCCAACTCACCTTGAAATCAGACGTCTACGGTTTTGGAGTTGTGCTGCTGGAGATCATCACCGGACGACGAGCCATTGATACAACCAGACCCAATGAGGAGCAGAATTTAGTTTCATGGGCACAACCCTTGTTCAGGAATCCAAAACAATTTCCAGAAATGGCGGATCCGCTGTTGAACAGGCATTTCCCGGAAAAAGACCTAAATCAAGCAGTAGCAGTAGCGGCCATGTGCCTTCAGGAGGAAGAGGGGGCGAGGCCGTTGATGAGTGACGTGGTAACTACTCTGAGTTTCCTGTCCATGGAGGTAATTCCAGCATCCTTGCCCTTGCAGGATGAGGATGATGATGATGGTTCAGACGAGGAGGAGGATGAAGATGAGGAGGAGGAGGATGAATATTATGATGAGACAGAAGGGGGATCAAGCAGCGGGAGTTGGGAAGAGGTGAGTATGACCTCTAGCAAGAGATCGCGAAATCTGAGTAGGAAGAAAAGTAGCTGCAGAGAGTTAAAGCACAAGAGTAGCAAGAAGGGAGGAGGAATAGTGTCGAGTAGAAGATCATCCAGAAGCAGCTATAAGTTGAGCACAGAATGGGAGGAGGAGGAGGAAGGAGGAGAGGTAATGCATGAGAGAGGGAGCAGTAGGTTGTCTCAGAGAGATATATCCTTTGGTCTAACCAGCAGTTGGGGAAGCATGCACAGCGACGACGGCGACCTAGTCATCAGCGCCAGGGGCTCACCGGAAGGGGCCCAACGGCGGTTGCAGCACGCCCTCACTGCCAGACTACCTTCCAAAGATTTACGCAGGGCACGTCTTGCCACTTCTAGTTCCAAAGTGTAA 1545 0.4951 MNCFSCFTCQRSKKNLAAGDLEAQDHLASKPPDNGTQCQSPPIQAQTFTFRELAIATRNFRQECLLGEGGFGRVYKGTIPATGKVVAVKQLDRNGMNVGKDFLTEVVSLSHLNHENLVNLIGYCVDGDQRLLVYEYMSGGSVYDRLFGQEEGRSPLDWFNRMKIASGAARGLKYLHDKDIVYRDLKSSNILLDDNLNAKLSDFGLNKLSEGDKTNLISPGVTGTYGYSAPEYTRTGQLTLKSDVYGFGVVLLEIITGRRAIDTTRPNEEQNLVSWAQPLFRNPKQFPEMADPLLNRHFPEKDLNQAVAVAAMCLQEEEGARPLMSDVVTTLSFLSMEVIPASLPLQDEDDDDGSDEEEDEDEEEEDEYYDETEGGSSSGSWEEVSMTSSKRSRNLSRKKSSCRELKHKSSKKGGGIVSSRRSSRSSYKLSTEWEEEEEGGEVMHERGSSRLSQRDISFGLTSSWGSMHSDDGDLVISARGSPEGAQRRLQHALTARLPSKDLRRARLATSSSKV 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0025 514 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Mibi02g0025 514 FunFam Serine/threonine-protein kinase PBS1 137 346 - -
Mibi02g0025 514 Gene3D Transferase(Phosphotransferase) domain 1 137 342 - -
Mibi02g0025 514 SMART serkin_6 60 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi02g0025 514 MobiDBLite consensus disorder prediction 392 406 - -
Mibi02g0025 514 CDD STKc_IRAK 66 331 - -
Mibi02g0025 514 SUPERFAMILY Protein kinase-like (PK-like) 38 334 IPR011009 -
Mibi02g0025 514 Pfam Protein kinase domain 62 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi02g0025 514 ProSiteProfiles Protein kinase domain profile. 60 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi02g0025 514 MobiDBLite consensus disorder prediction 341 451 - -
Mibi02g0025 514 Gene3D Phosphorylase Kinase; domain 1 33 136 - -
Mibi02g0025 514 MobiDBLite consensus disorder prediction 373 391 - -
Mibi02g0025 514 FunFam probable serine/threonine-protein kinase RLCKVII 33 136 - -
Mibi02g0025 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Mibi02g0025 514 PANTHER OS07G0668900 PROTEIN 22 337 - -
Mibi02g0025 514 MobiDBLite consensus disorder prediction 344 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0025 Mibi-ChrMibi02 399643 401593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0025 1 378 Glycoside Hydrolase AT3G07070 57.353 1.94e-146 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Mibi02g0025 Pkinase 1.2e-46 CL0016