Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g0019 ATGGATTTCGATGCCGCTCTCCCCATCCCCCCCGCGGCCCTCTCCCCAGATACAATGTGGCAATTGAAATTGAGATCAGGTGAAACAATGGAATCTGGACCTTATCCTGAGCGTCCAGGAGAATTAGATTGTTCTTACTACATCAGAACAGGCCTTTGTAGATTTGGGGCAACATGCCGATTTAATCATCCTCCAAACAGGAAGCTGGCTATTGCCACTGCAAGGATGAAAGGTGAGTTTCCAGAAAGAGTAGGACAGCCAGAATGTCAGTATTATCTGAAGACGGGAACTTGCAAGTTTGGAACCACGTGCAAGTTTCATCATCCAAGAGAAAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATAGTTTAGGCTATCCACTTCGCCCAAATGAACCTGAATGTGCTTATTATTTGAGAACTGGACAATGCAAATTTGGGAGCACTTGCAAATTCCATCATCCTCAGCCAAATAATATGATGATTTCTTTGCGGGGTTCTCCTGTTTATCCTACTATTCATTCTCCAACTACACCAGGCCAGCAGTCATCATATGCAGGGGGAATCACAAATTGGTCTAGAGCTTCTTATATTGCTAGTCCACGCTGGCAAGGCCCTTCAAGCTATGCACCTCTGATCCTACCTCAGGGAGTGGTTTCAGTTCCTGGGTGGAGTGCATACAGTGGTCAGATTGGATCAATGTCTAGTTCAGACAGTCCACAGCAAACAATAGGAAATGGTCAAATGTATGGAACTTCCCGCCAGGGTGAACCAACAAATGCAGGATCTCAAGGGACATATTCTCAATTTCGTTCTGGCTCTGTACCTCTGGGGTTTTATGCTCTGCAGAGGGAGAACATATTTCCTGAGAGGCCTGGTCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTTCATCATCCACGTGAGAGATTAATACCTGCTCCTGACTGTGTTTTAAGTCCTATAGGCCTTCCTCTACGTCCTGGAGAGCCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTTGGCCCCAGTTGCAAGTTTGATCATCCAATGGGAATCTTTGCATACAATAATATATCTGCATCACCTTCAGCAGATACCCCTGTCCGCCGTTTGCTGGGATCTTCATCAGGAACTGCTGCATTGAATTTATCATCAGATGGACTTGTTGAGTCAGGCTCAGCAAAGCCCCGGCGGCTTTCACTGTCAGAAACTAGACAGATGTCTTCTGACGATAGCATTAATGAAGAGGGATGA 1296 0.4568 MDFDAALPIPPAALSPDTMWQLKLRSGETMESGPYPERPGELDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERVGQPECQYYLKTGTCKFGTTCKFHHPREKAGIAGRVALNSLGYPLRPNEPECAYYLRTGQCKFGSTCKFHHPQPNNMMISLRGSPVYPTIHSPTTPGQQSSYAGGITNWSRASYIASPRWQGPSSYAPLILPQGVVSVPGWSAYSGQIGSMSSSDSPQQTIGNGQMYGTSRQGEPTNAGSQGTYSQFRSGSVPLGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYNNISASPSADTPVRRLLGSSSGTAALNLSSDGLVESGSAKPRRLSLSETRQMSSDDSINEEG 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g0019 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Mibi02g0019 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 43 65 IPR000571 GO:0046872
Mibi02g0019 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Mibi02g0019 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 293 318 IPR000571 GO:0046872
Mibi02g0019 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 339 364 IPR000571 GO:0046872
Mibi02g0019 431 ProSiteProfiles Zinc finger C3H1-type profile. 38 66 IPR000571 GO:0046872
Mibi02g0019 431 SUPERFAMILY CCCH zinc finger 132 157 IPR036855 GO:0046872
Mibi02g0019 431 SMART c3hfinal6 337 364 IPR000571 GO:0046872
Mibi02g0019 431 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Mibi02g0019 431 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Mibi02g0019 431 SMART c3hfinal6 291 318 IPR000571 GO:0046872
Mibi02g0019 431 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Mibi02g0019 431 FunFam CCCH type zinc finger protein 289 378 - -
Mibi02g0019 431 SUPERFAMILY CCCH zinc finger 295 321 IPR036855 GO:0046872
Mibi02g0019 431 Gene3D - 126 177 - -
Mibi02g0019 431 ProSiteProfiles Zinc finger C3H1-type profile. 291 319 IPR000571 GO:0046872
Mibi02g0019 431 Gene3D - 39 118 - -
Mibi02g0019 431 Gene3D - 290 371 - -
Mibi02g0019 431 SUPERFAMILY CCCH zinc finger 340 364 IPR036855 GO:0046872
Mibi02g0019 431 MobiDBLite consensus disorder prediction 231 267 - -
Mibi02g0019 431 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Mibi02g0019 431 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Mibi02g0019 431 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Mibi02g0019 431 MobiDBLite consensus disorder prediction 402 431 - -
Mibi02g0019 431 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Mibi02g0019 431 FunFam Zinc finger nuclease 2 37 114 - -
Mibi02g0019 431 PANTHER PROTEIN PHOSPHATASE RELATED 27 385 - -
Mibi02g0019 431 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g0019 Mibi-ChrMibi02 330143 335257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g0019 19 426 C2H2 Transcription Factor Family AT3G02830 62.560 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi02g0019 zf-CCCH 5.2e-09 CL0537