Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3614 ATGATTCCCATTAGCTGCTGCGTCGTTCTCTCTGTATGGCTCCTCAGCTTTGCTTTCTCTCCGCCTACCATTAAAGCTGCCTTCAATCCTGAACATGTGGTTATGGATGTTCAAAGGAGAATAAACGCGTCTCTGTGGAGAAGACAACTGGTGTCCGGTGAGGAAGGTGCAGGGTGCATGACGGGGAACCCCATCGACGACTGCTGGCGGTGCGACCCCAACTGGGCCGGGGAGAGGCAGAAGCTAGCCGAGTGTGGCATTGGGTTCGGCAGGGAGGCCGGGGGCGGCAAGGGAGGGCAGTTCTACATCGTGACGGACCCTTCGGATGAGGACCCGGTGAACCCAGGAGTGGGAACCCTGCGGCACGCGGTAATCCAAGACGAACCCCTGTGGATCGTGTTTGCAGGAAACATGGTGATCAGGCTGAAGCAGGAGCTGCTTTTCAACAGCTTCAAGACGGTGGACGGACGAGGCGCCAGCGTGCACATAACAGGCAACGGCTGCATGACGCTGCAGTACGTGAGCAACATAATCATTCACAACATCCACGTCCACCACTGCAGGCCGTCGGGGAGGGCCATGCTAAGGGCGAGCCCAGCGGAGGTGGGATGGAGGGGGGGATCGGACGGCGACGGGGTGTCCATATACGGCTCACACGACATATGGATAGACCACTGCACCCTGGCGTACTGCACGGACGGCCTCATAGACGCCATAATGGGGTCCACGGGGATAACCGTATCCAACAGCTATTTCTCGAATCACGACAAGGTGATGCTGCTGGGGCACGATGACAGGTATGTGGGGGACAGGGGGATGAGAGTGACGCTGGCCTTCAACCACTTCGGGGAGAGCTTGGTGCAGAGGATGCCACGCTGCAGGCACGGTTACGTGCACGTGGTGAACAACGACTACAGGAGTTGGGAGATGTATGCCATAGGGGGCAGCGCTGCGCCCACCATCAACAGCCAGGGCAACCGCTACTGGGCTGGCCATGCCAAAGAGGTCACCAAGAGGGTGGAGAGCGATGAGGGAGAGTGGTCCTCCTGGAACTGGAGGACTGAGGGCGACTTAATGCTCAACGGAGCCTACTTCGTGGCGTCCGGCGACCAACAATACCTGCAGGAGGAGCAGGACTCCTCCCTTCCCCCCCAGTCCCCCCTTCACATCGACCTCCTCACCCTCAACGCCGGCGTCTTTAACGATCCCCCCTATCCCCCCTCCGTCTTCATGGCCGCTCATCACGGGCAAGCCACCCCCAGTCACGCTCCTCTCCTTCTTTCCTTCTCTCCCCTACTACTCTTGCACCTACTCTTGTTCCTTCATTTTGGGTAA 1335 0.5895 MIPISCCVVLSVWLLSFAFSPPTIKAAFNPEHVVMDVQRRINASLWRRQLVSGEEGAGCMTGNPIDDCWRCDPNWAGERQKLAECGIGFGREAGGGKGGQFYIVTDPSDEDPVNPGVGTLRHAVIQDEPLWIVFAGNMVIRLKQELLFNSFKTVDGRGASVHITGNGCMTLQYVSNIIIHNIHVHHCRPSGRAMLRASPAEVGWRGGSDGDGVSIYGSHDIWIDHCTLAYCTDGLIDAIMGSTGITVSNSYFSNHDKVMLLGHDDRYVGDRGMRVTLAFNHFGESLVQRMPRCRHGYVHVVNNDYRSWEMYAIGGSAAPTINSQGNRYWAGHAKEVTKRVESDEGEWSSWNWRTEGDLMLNGAYFVASGDQQYLQEEQDSSLPPQSPLHIDLLTLNAGVFNDPPYPPSVFMAAHHGQATPSHAPLLLSFSPLLLLHLLLFLHFG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3614 444 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Mibi01g3614 444 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Mibi01g3614 444 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Mibi01g3614 444 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Mibi01g3614 444 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Mibi01g3614 444 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Mibi01g3614 444 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Mibi01g3614 444 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Mibi01g3614 444 SMART amb_all 137 334 IPR002022 -
Mibi01g3614 444 PANTHER PECTATE LYASE 18-RELATED 28 400 IPR045032 GO:0030570
Mibi01g3614 444 SUPERFAMILY Pectin lyase-like 57 373 IPR011050 -
Mibi01g3614 444 Pfam Pectate lyase 144 321 IPR002022 -
Mibi01g3614 444 Gene3D - 62 400 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3614 Mibi-ChrMibi01 62924319 62926088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3614 1 400 Polysaccharide Lyase AT3G53190 60.577 5.78e-175 497