Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3575 ATGGATCCAAAAGAAAATCTTTGTGCCAACACCTGGGCGGAGTCCTCTTCTTTGAATTCTTTGAGGAATGGACTGCATGTTAATTTGTCATCGGACACTCCGTTTGCCAATCTGGGTTTGCAGCAGAATCAACCATGGGATATACCCTCTATTCAAGATTATGGCCTCGGTACTGAAGCTTTCAAAGAACTTAACCAACTCTCTCAAACCCAAGCTTTCCTTTCCAGTGATTCCAACAACGAAATTAAGATCCCTGGTCAAGATGTTTGTCAGATCAGTGACACATCACTGACCGGTAAAGTCCCCAATTGGGACCCCAGTGTAATGTTGAATAATTTGTCTTTTCTGGAAGATAAGATTCATCAGCTTCAGGATCTTGTGCACCTTATTGTTGGTCGGAAAGGCCAATCTTTTGTTCAGCCTGATGAAGTTGTTGTGCAGGAGCAGCAGCTTATTACAGCTGATCTTACATCAATTATTGTTCAGTTGATTTCTACTGCAGGTAGTCTTCTCCCTTCTGTCAGGCATACCCTTAAAAATACCGGTCCATCGGTTGGACAGCCTGGCCAGCCTCGGGAGAATGCTATTCCTTCTGGATCAGGTGGTCCTAGTACTAGTGCTCATCCACAAAATAATAGTGCAAATAAAAAGTCTGATGAGTCCACTCAGATTGATCTGCCCAAGGGTTGTGAAATGGAGCAAAACTACAATGTGGATGAGCATGAATCAAAAGATGAAGACATGGAGGAGGGTGAGAACCTTCCACCTGGGTCTTACGAGATTTTGCAGTTAGAAAAAGAAGAAATCCTGGCACCTCATACACACTTCTGTACAATTTGTGGGAAGGGATTCAAGCGAGATGCAAATCTTAGGATGCACATGAGAGGTCATGGTGATGAATACAAGACCCCAGCGGCACTTGCTAAACCAAACAAAGAATCTGGGCCCGAACTGAAGCTTATAAAGAGGTATTCCTGCCCCTATGCAGGATGCAAACGTAACAAGGATCACAAGAAGTTTCAACCTCTGAAGACAATCTTATGTGTTAAAAATCATTATAAAAGAACACACTGTGACAAGAGTTACATTTGCAGCAGGTGCCACACGAAGAAGTTTTCGGTCATGGCTGATCTAAAAACGCATGAAAAGCACTGTGGAAAGGACAAATGGCTCTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTCCAAGGTCATACACCAGCCATTCCTTTAGATGATGCAAAAGCACCAGCTTTGCCACCTGATCGTGAAAGCAAAGAAAACAGTAGTAAGGTAGGAGTAAACTTGAGTTTTGCATCCAATCCGTCTGGAGGGAATGGAGTTCAAAACATCATGGATGTGAAGGGTGATGTTGATGATCCTATAAATTATTTATCTTCGTTGAACTTTGATACCTGTAATTTTGGTGGCTATAATGAATTCCCCCGGCCTCCTTTTGAAGACTCAGAAGGTTCATTCTCCTTCATCATGCCTGGATCTTTCAGTTACTCTCAGAAGACTGGAGGAGAAGCAGATTCTGGATAA 1572 0.4275 MDPKENLCANTWAESSSLNSLRNGLHVNLSSDTPFANLGLQQNQPWDIPSIQDYGLGTEAFKELNQLSQTQAFLSSDSNNEIKIPGQDVCQISDTSLTGKVPNWDPSVMLNNLSFLEDKIHQLQDLVHLIVGRKGQSFVQPDEVVVQEQQLITADLTSIIVQLISTAGSLLPSVRHTLKNTGPSVGQPGQPRENAIPSGSGGPSTSAHPQNNSANKKSDESTQIDLPKGCEMEQNYNVDEHESKDEDMEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPNKESGPELKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDAKAPALPPDRESKENSSKVGVNLSFASNPSGGNGVQNIMDVKGDVDDPINYLSSLNFDTCNFGGYNEFPRPPFEDSEGSFSFIMPGSFSYSQKTGGEADSG 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3575 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 275 302 IPR013087 -
Mibi01g3575 523 SMART c2h2final6 362 384 IPR013087 -
Mibi01g3575 523 SMART c2h2final6 275 297 IPR013087 -
Mibi01g3575 523 SMART c2h2final6 324 357 IPR013087 -
Mibi01g3575 523 Gene3D Classic Zinc Finger 259 327 - -
Mibi01g3575 523 SUPERFAMILY beta-beta-alpha zinc fingers 273 300 IPR036236 -
Mibi01g3575 523 MobiDBLite consensus disorder prediction 178 231 - -
Mibi01g3575 523 MobiDBLite consensus disorder prediction 178 220 - -
Mibi01g3575 523 ProSitePatterns Zinc finger C2H2 type domain signature. 277 297 IPR013087 -
Mibi01g3575 523 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 84 496 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3575 Mibi-ChrMibi01 62229863 62231434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3575 244 522 C2H2 Transcription Factor Family AT1G34370 70.732 4.31e-139 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi01g3575 None None None