Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3545 ATGGTTCAGCCTAATGGTCCTCCTTCGACGCCTGTGTCGCCTGCCGCTGCCGCAATGTCCACCGCACAATTCTCCAATATGTCATTGTACGTTGGTGATCTTGACCGTAATGTGGATGAAAGCCAGCTTTTTGATCTCTTCAATCAAGTGGCTTCCGTAGTCTCCATTAGGGGTATCTTCCTAGGCAAGGCATCTTTTTTCCTGCTACTGGTAATGCTATTAGAATTAACATTGGTTTATACTATTGCAGCGACTAATGCAATGGAAGTTTTGAATTTTACCACCATTAATGGGAAACCAATTCGGATCATGTTCTCCCATAGAGACCCTAGCATTCGGAAAAGTGGATTTGCTAATGTGTTCATCAAGAACTTGGACACATCAATAGATAACAAGGCATTACATGACACTTTTTCTGCTTTTGGGACCGTGCTTTCCTGCAAAGTAGCTGTTGACGGCTCTGGTCAGTCGAGAGGTTACGGTTTTGTACAGTTTGACAAAGAAGAAGCTGCGCAAAATGCCATCAAACAGCTGAATGGCATGCTGATGAATGATAAACAAGTCTATGTTGGACTCTTTGTTCGGAGCGAGGAAAGGGCTCGTGCGAATGGATCGCCAAAGTTTACTAATGTTTATGTGAAAAATTTCTCAGAAACATATACTGATGAGGACCTCAAACAACTTTTTGAGCCATATGGTGCAATAACTAGTGCTGTTGTCATGAAAGATGCGAATGGGAACTCTCGATGTTTTGGCTTTGTTAATTTCCAAAGCCCAGAATCTGCAGCCGCTGCGGTTGAGAAGTTAAATGGAACCACTATCAATGATGAAAAGGAATTATATGTAGGGAGAGCTCAAAAGAAATCACAAAGAGAGGCGGAGTTGAAGGCCAAATTTGAGCAGGAGAGAATAAGTCGATATGAGAAATTACAAGGTGCTAATCTATACTTGAAAAATCTTGATGATAGCATCAATGATGACAAATTGAAGGAGCTATTTTCTGAGTTTGGAACTATTACATCATGCAAGGTTATGGTTGACTCACAGGGGCATAGCAAGGGTTATGGTTTTGTGGCTTTTTCTACGCCTGAGGAAGCAAGTAAAGCTTTGAACGACATGAATGGGAAAATGGTTGGTCGAAAACCTCTTTATGTTGCAGTGGCCCAGAGGAAAGAAGAGAGGAGGGCTCTGCAGCAGGCTCGTTTTGCTCAAATCCGTGCGCCTGGTAGGATGGCACCTCTGCCTGCTGGAATTCCTGGATATCATCCTGGGGCACCTAGGCTTGGCCCTCAACAATTGTACTATGGTCAGGGAACGCCTGGTATGATGCCACCTCAGCCAGCTGGATTTGGTTTCCAGCAACAACTCTTGCCTGGAATGCGTCCTGGTGTGGCTCCAAATTTCATCATGCCATATCAGCTTCAGAGACAGGTTCAGCCAGGGCAAAGGATGGGTGTCCGGCGGGGTGGAAATTTTCAGCACGTGCAACAGAACCAGATGCTGCATCGGAACCAGAATAATGGGTTTAGATACATGGGTAACAATCGAAATGGCATGGACCCATCTATTGTTCCACAAGGCCTGATGAGTCCAATAATGCCATTACCATTTGACGGCTCTGGGGTTCCTTCAGCCCCCGTTGATAATATAAGACCTGGCACAGGTTCTGCAACGCTTGCCTCAGCTTTGGCCTCTGCTACACCAGAAAATCAACGCTTGATGCTGGGTGAACAACTATATCCCCTCGTAGAGCGCCTTGCGCCAGATCATACGGCAAAAGTGACAGGGATGTTGTTGGAAATGGATAAATCTGAGGTTATCCATCTCATTGAATCTCCTGAAGACTTGAAAACAAAGGTGTCTGAGGCAATGCAAGTCCTACATGAAGCTGCATCGAGTACTGAAGTTGGTGAACAGCTTAGCTCGCTAACACTGAATGAATGA 1944 0.4501 MVQPNGPPSTPVSPAAAAMSTAQFSNMSLYVGDLDRNVDESQLFDLFNQVASVVSIRGIFLGKASFFLLLVMLLELTLVYTIAATNAMEVLNFTTINGKPIRIMFSHRDPSIRKSGFANVFIKNLDTSIDNKALHDTFSAFGTVLSCKVAVDGSGQSRGYGFVQFDKEEAAQNAIKQLNGMLMNDKQVYVGLFVRSEERARANGSPKFTNVYVKNFSETYTDEDLKQLFEPYGAITSAVVMKDANGNSRCFGFVNFQSPESAAAAVEKLNGTTINDEKELYVGRAQKKSQREAELKAKFEQERISRYEKLQGANLYLKNLDDSINDDKLKELFSEFGTITSCKVMVDSQGHSKGYGFVAFSTPEEASKALNDMNGKMVGRKPLYVAVAQRKEERRALQQARFAQIRAPGRMAPLPAGIPGYHPGAPRLGPQQLYYGQGTPGMMPPQPAGFGFQQQLLPGMRPGVAPNFIMPYQLQRQVQPGQRMGVRRGGNFQHVQQNQMLHRNQNNGFRYMGNNRNGMDPSIVPQGLMSPIMPLPFDGSGVPSAPVDNIRPGTGSATLASALASATPENQRLMLGEQLYPLVERLAPDHTAKVTGMLLEMDKSEVIHLIESPEDLKTKVSEAMQVLHEAASSTEVGEQLSSLTLNE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3545 647 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 555 632 IPR002004 GO:0003723
Mibi01g3545 647 FunFam Polyadenylate-binding protein 199 295 - -
Mibi01g3545 647 Gene3D - 14 116 IPR012677 -
Mibi01g3545 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Mibi01g3545 647 SUPERFAMILY RNA-binding domain, RBD 27 197 IPR035979 GO:0003676
Mibi01g3545 647 Gene3D - 117 192 IPR012677 -
Mibi01g3545 647 CDD RRM3_I_PABPs 208 288 - -
Mibi01g3545 647 CDD RRM4_I_PABPs 312 390 - -
Mibi01g3545 647 Coils Coil 290 310 - -
Mibi01g3545 647 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 28 627 IPR006515 GO:0003723
Mibi01g3545 647 CDD RRM2_I_PABPs 116 191 IPR045305 -
Mibi01g3545 647 SUPERFAMILY RNA-binding domain, RBD 309 408 IPR035979 GO:0003676
Mibi01g3545 647 Gene3D - 193 300 IPR012677 -
Mibi01g3545 647 SMART rrm2_1 314 386 IPR003954 GO:0003676
Mibi01g3545 647 SMART rrm2_1 119 191 IPR003954 GO:0003676
Mibi01g3545 647 SMART rrm2_1 210 282 IPR003954 GO:0003676
Mibi01g3545 647 FunFam Polyadenylate-binding protein 119 192 - -
Mibi01g3545 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 277 IPR000504 GO:0003723
Mibi01g3545 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Mibi01g3545 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Mibi01g3545 647 PANTHER RNA BINDING PROTEIN 84 415 - -
Mibi01g3545 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 108 IPR000504 GO:0003723
Mibi01g3545 647 SUPERFAMILY PABC (PABP) domain 498 633 IPR036053 GO:0003723
Mibi01g3545 647 FunFam Polyadenylate-binding protein 296 401 - -
Mibi01g3545 647 Gene3D - 554 632 - -
Mibi01g3545 647 SUPERFAMILY RNA-binding domain, RBD 205 295 IPR035979 GO:0003676
Mibi01g3545 647 SMART rrm1_1 28 104 IPR000504 GO:0003723
Mibi01g3545 647 SMART rrm1_1 119 191 IPR000504 GO:0003723
Mibi01g3545 647 SMART rrm1_1 210 283 IPR000504 GO:0003723
Mibi01g3545 647 SMART rrm1_1 314 386 IPR000504 GO:0003723
Mibi01g3545 647 FunFam Polyadenylate-binding protein 552 633 - -
Mibi01g3545 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Mibi01g3545 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Mibi01g3545 647 SMART poly_2 567 630 IPR002004 GO:0003723
Mibi01g3545 647 Pfam Poly-adenylate binding protein, unique domain 563 627 IPR002004 GO:0003723
Mibi01g3545 647 Gene3D - 301 403 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3545 Mibi-ChrMibi01 61789413 61792874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3545 26 636 Eukaryotic Initiation Factors Gene Family AT1G71770 57.778 0.0 677