Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3540 ATGGCAGGATCGGAGACGGGAACACCAACGGCGGCGTCGGCGCCGGCGACGCCGGGGACTCCGGCGCCGCTGTTCACGTCGCTGCATGTGGACTCACTGTCATATGAGAGGAACTCAATGCCAAGGTGTAAGTGTTTGCCAACCAAAGGCCACACTTGCTTCACTGACTTCCCTATTGTCCCCACTCCTGACGTGTCTCTCACGCGCAAGATCGGAGCAGAGTTTGTGGGAACATTCATGTTGATGTTTGCGGCGTCGGCGGGGCCCATACTGAACCAGAAGTACAGCGGATCAGAGAGCCTTCTGGGGAATGCAGCATGCGCAGGCTTAGGAGTGATGATAGTGATTCTGTCCACCGGCCACATCTCCGGCGCCCACCTCAACCCTTCACTCACCATCGCCTTCGCCGCCTTCCGCCACTTCCCTTGGCTCCATGTTCCCGCCTACATCGCCGCCCAGGTCTCCGCCTCCATCTGCGCCTCCTTCGCCCTCAAGGGCATCTTCCACCCTTTCCTCTCCGGCGGCGTCACCATCCCCTCCCCCACCACCACCGTCCCCCAGGCCTTCGCCCTCGAGTTCATCATCACCTTCAATCTCCTCTTCGTCGTCACCGCCGTCGCCACCGACACCCGTGCCGTTGGGGAATTGGCTGGAATTGCTGTTGGAGCCACTGTTTTGCTCAACATTCTCATATCTGGGCCGGCAAGTGGCGGTTCAATGAACCCGGTTCGCACCTTGGGTCCAGCCGTGGCAGCAGGAAATTACAAGCACATATGGTTATATCTGGTTGCGCCCACCCTCGGAGCTTTGGCCGGCGCCGGTGTTTATACTCTCGTCAAGCTCCGTGACCATGAGGTCGAGCAGCCACGTCAGGTTCGGAGCTTCCGTCGCTAG 894 0.5984 MAGSETGTPTAASAPATPGTPAPLFTSLHVDSLSYERNSMPRCKCLPTKGHTCFTDFPIVPTPDVSLTRKIGAEFVGTFMLMFAASAGPILNQKYSGSESLLGNAACAGLGVMIVILSTGHISGAHLNPSLTIAFAAFRHFPWLHVPAYIAAQVSASICASFALKGIFHPFLSGGVTIPSPTTTVPQAFALEFIITFNLLFVVTAVATDTRAVGELAGIAVGATVLLNILISGPASGGSMNPVRTLGPAVAAGNYKHIWLYLVAPTLGALAGAGVYTLVKLRDHEVEQPRQVRSFRR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3540 297 ProSitePatterns MIP family signature. 126 134 IPR022357 -
Mibi01g3540 297 PRINTS Major intrinsic protein family signature 259 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi01g3540 297 PRINTS Major intrinsic protein family signature 108 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi01g3540 297 PRINTS Major intrinsic protein family signature 145 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi01g3540 297 PRINTS Major intrinsic protein family signature 69 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi01g3540 297 PRINTS Major intrinsic protein family signature 222 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi01g3540 297 PRINTS Major intrinsic protein family signature 191 209 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi01g3540 297 SUPERFAMILY Aquaporin-like 65 290 IPR023271 -
Mibi01g3540 297 FunFam Aquaporin NIP2-1 57 291 - -
Mibi01g3540 297 Pfam Major intrinsic protein 65 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi01g3540 297 Coils Coil 292 297 - -
Mibi01g3540 297 PANTHER AQUAPORIN NIP2-1 52 287 IPR034294 -
Mibi01g3540 297 MobiDBLite consensus disorder prediction 1 20 - -
Mibi01g3540 297 CDD MIP 69 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi01g3540 297 MobiDBLite consensus disorder prediction 1 15 - -
Mibi01g3540 297 Gene3D Glycerol uptake facilitator protein. 56 293 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3540 Mibi-ChrMibi01 61738709 61744225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3540 24 297 Major Intrinsic Protein MIP AT4G10380 75.801 6.99e-152 425