Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3512 ATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATGGTTTTGGAAGCTTGTCGAGGCGGAGTTTCGATTTAAGGCTTCATGGCCATCACAGGGGCAAGTCACATAGTTCAGTCCATGAGTTGCCAGAACAACCTCCAGTGATACAGAACAGCCGATGGGCTATCCTTCCGCCTGAGCTCCTTCATGATGTTATCAAAAGATTGGAAGAAAGTGAGAGCACATGGCCTGCCCGTAAGCATGTGGTCGCATGTGCTGCTGTGTGCAAGTCTTGGAGAGAAATGTGCAAAGAAATTGTGAGCAATCCAGAGTCCTGTGGGAAAATTACTTTTCCTGTTTCCTTGAAGCAGCCTGGGCCTCGGGATGGAATGATGCAGTGTTTCATCAAGAGAGACAAATCTAACCTGACATATCACCTCTTTCTTTGCTTAAGTCCTGCCTTGCTTGTTGAGAATGGGAAGTTTCTTCTCTCAGCCAAACGGACCAGACGAACAACTTGCACAGAGTACATTATATCCATGGATGCCGATTCCATATCAAGATCTAGCAGCACTTATATTGGGAAACTACGGTCGAATTTTCTGGGCACCAAATTCCTAATATATGATACACAGCCTCCCCATAATTATGCTCAGTTGCCTGCTCCTCAACCTAGCCAAAGCCGTCGGTTCTATTCTAAAAAGGTGTCTCCGAAAGTCCCTAGTGGCAGCTACAATATTGCGCAGGTCACCTATGAGTTGAATGTGCTCGGTACTAGAGGCCCACGGAGAATGAACTGTACCATGTGCTCAATCCCAGAATCAGCCCTCAAGCCTGGTGGCACGGTCCCAGGCCATCCAGAGCTCCTTCCCCGTGCCCTAGAGGACTCATTCCGGAGTACAACCTTTTCAAAATCAATCCATAGCTCTTCCAATTTTAGCAGCTCTAGGTTCTCGGACATCATGTGGAGTGGTAATGAAGAAGAGAATGGCGAGGTAAAAGAGAGGCCACTGGTTCTCAAGAACAAAGCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTCAACTTCCGGGGCAGAGTGACCGTGGCCTCGGTCAAGAATTTTCAGTTGATTGCCGCAGTGCAGCCTCAGCCTGCAGCAGCCGGTGGTCCAACAACGCTGGCACAGCCTGCCCCGGTCGATCACGACAAGATTATTCTTCAGTTTGGCAAGGTAGGCAAGGATATGTTCACCATGGATTATCGATATCCTTTGTCAGCATTCCAGGCTTTTGCCATATGCTTGACTAGCTTTGATACAAAACTAGCATGTGAATAG 1299 0.4827 MSFRSIVRDVRDGFGSLSRRSFDLRLHGHHRGKSHSSVHELPEQPPVIQNSRWAILPPELLHDVIKRLEESESTWPARKHVVACAAVCKSWREMCKEIVSNPESCGKITFPVSLKQPGPRDGMMQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADSISRSSSTYIGKLRSNFLGTKFLIYDTQPPHNYAQLPAPQPSQSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMCSIPESALKPGGTVPGHPELLPRALEDSFRSTTFSKSIHSSSNFSSSRFSDIMWSGNEEENGEVKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAVQPQPAAAGGPTTLAQPAPVDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3512 432 FunFam Tubby-like F-box protein 48 101 - -
Mibi01g3512 432 SUPERFAMILY F-box domain 43 96 IPR036047 GO:0005515
Mibi01g3512 432 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Mibi01g3512 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Mibi01g3512 432 Gene3D Tubby Protein; Chain A 112 426 IPR025659 -
Mibi01g3512 432 Gene3D - 48 101 - -
Mibi01g3512 432 Pfam F-box domain 53 101 IPR001810 GO:0005515
Mibi01g3512 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Mibi01g3512 432 FunFam Tubby-like F-box protein 110 432 - -
Mibi01g3512 432 PANTHER TUBBY-RELATED 40 430 - -
Mibi01g3512 432 Pfam Tub family 114 427 IPR000007 -
Mibi01g3512 432 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Mibi01g3512 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Mibi01g3512 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Mibi01g3512 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Mibi01g3512 432 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Mibi01g3512 432 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Mibi01g3512 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3512 Mibi-ChrMibi01 61410341 61412895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3512 1 432 TUB Transcription Factor Family AT1G76900 69.011 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mibi01g3512 Tub 2.8e-115 CL0395