Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3479 ATGGCAGATCTTGCTAGCCTCGGAAATGCCGGCTGTGACACAGAGCAGATTAGCAAGGATAAAATTGATGCAGAAGTGTGGATTGCTGGCCTCAAAGCTCTGATATCTTCTGGCCAAGGTGGGCGGATTACACTCTCAGATGGTCAGGACAGAGAACTTACTACTTCTGTGATGATTGGAATAATGGACTTGACATCAAGTAGTCCGAGTGAAAGCCCTTCAAATATGCAAGCAAAAGGATCTAGTTCAGATGTTTTCAGAGTCAGTGTTTCAAGTGCCCCCAGTACATCAAGTCATGGATCTGCACCAGATGACTGTGATGCTCTGGGTGATGTATACATATGGGGGGAGGTTATCACTGAGAATGTTATGGGAGTTGGTGAAGATAAAGTTTTCAATCACTTCAGTCCAAGGGTAGATGTGCTTTTGCCCAGGCCACTGGAATCCAATGTAGTTTTAGACGTACATCATATAGCATGTGGTGTTAAACATGCTGCACTAGTCACAAGGCAAGGTGAGGTATTTACTTGGGGTGAAGAATCTGGAGGACGTCTAGGCCATGGTGTTGAGAAGAATGTAGTTCAACCTCGTCTAGTTGAAGCTCTGGCTTCTACAACTGTTGATTTTGTTGCTTGTGGGGAGTTTCACACCTGCGCTGTTACAATGGCTGGGGAACTATATTCTTGGGGTGATGGAACTCATAACGCTGGACTTCTTGGTCATGGAACTGATATAAGTCATTGGATACCCAAACGAATTTCAGGTCTACTAGATGGACTTCAAGTTGCATTTGTCACCTGTGGTCCATGGCACACAGCCTTGATAACTTCAATTGGGCAACTCTTCACATTTGGTGATGGAACATTTGGAGTCCTGGGTCATGGAGATAGGGAGAATGTTTCATATCCTAGAGAAGTACAATCATTGTCAGGGTTAAGAACAATAACTGTTGCTTGTGGAGTGTGGCATACTGCAGCTGTGGTTGAGGTTATTGTGACACAATCCAGTGCAAGTGTATCATCTGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGAGATAAGGAGGCCCGGCTTGAACCAACTTGTGTGCCTTTGCTCATTGATCACAATTTCTATAAGATTGCTTGTGGTCACAGTTTGACAGTTGGCCTCACAACTTCAGGGCGTGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGCAATCCACAGTCTGATGGAAAGCTTCCCTGCTTGGTCGAAGACAATCTTTCCGAAGAATTCGTTGAAGAAATTGCTTGTGGTGCATATCATGTTGCCGTTTTGACATCAAAAAATGAAGTTTTTACGTGGGGGAAGGGTGCTAATGGAAGGTTGGGTCATGGGGATGTTGAAGATCGAAAAGCCCCAACTTTGGTTGAAGCTTTGAAAGATAGACATGTTAAAAATATTGCGTGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAATGGGTATCGGGTGCTGAGCAGTCTCAGTGCTCTACTTGTAGGCAGCCATTTGGTTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGGCTTGTGCATTGCCACTCATGCAGTTCAAGAAAGGCATTGAGAGCAGCTCTGGCTCCTAACCCTGGAAAGCCATATCGTGTTTGTGATTCTTGTTTTGTAAAATTGACCAAGGTGGCAGAAGCTGGCATTAATAATAGAAGGAATGCCATGCCTCGTTTGTCTGGCGAAAACAAGGACAGGTTAGACAAATCTGAGATCAGGTTGGCCAAGTCACCAGTTCCTTCTAATGTGGATTTGATAAAGCTGCTAGATAGCAAGGCAGCTAGACAAGGGAAGAAGACTGATACATTCTCTTTGGCTCCTACCTCACAAGCCCCTTTGCTGCAACTGAAAGATGTTGTGTTGTCTACTGCTGTTGAAATGAGACGTACAACTCCAAGGCCAGTTCTGACATCATCAGCGGTAAGCTCCAGGTCTGTGTCCCCTTTTTCTAGAAAACCTAGTCCGCCTCGTTCAGCTACACCTGTTCCAACGACATCAGGACTTTCTTTCTCGAAAAGTATAAATGATAGTCTGAAGAAAACCAACGAACTTCTAAATCATGAAGTGCTGAAGTTACGCACTCAGGTTGAGAGCCTCAGAAAAAGGTGTGATTTACAAGAATTAGAGCTTCAAAGGGCAGAAAAGAGAACTCAGGAAGCTATGGCAGTGGCTGCTGAGGAATCTGCTAAATCTAAAGCTGCAAAAGAAGTTATAAAGTCACTTACAGTACAGCTTAAAAATCTGGCTGAGAGGCTACCACCAGGAGCTTATGAAACTGACAGCATCCGGCCAGCTTACGTGCCAAATGGTTCGGAGCCAAATGGCATTCACTATCCTGGCACAAATGGGGAGGGACATACCAGAGCAGAGTCAATCAGTGGATCTAGCCTTGCCTCCTTTGCTTTCGAATCTTCTCTATTCAATAAAACTGAGGTCACAGGAACTTATGCAACCAATCCTTACCAGCAAAGCCGGGTGCCTGGACCTTCCAATGGGACAAATGAATACCCAAATGTTGTCCTTGCCAATGGTGGTTTGTTTCAGGCAACTAGCAGTAGCATATTAGATATGGCTGATGGCAGGAATTCTGGGCTTCTCCAAGATGGCGAGAGTGGTTCAAGATCAAGGAGCGCTGTACTGGCTGCCAATAGTAATCAAGTTGAGGCAGAATGGATTGAACAGTATGAACCTGGGGTGTATATAACACTGACGGCCTTAAGTGATGGATCAAGAGATCTAAAACGAGTGCGCTTCAGTCGACGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCCGAGAATCGTGAGAAGGTATATGACAGGTACAATGTCCGTAGCAGCACTGAGAAGTCTTCGAGCCAAGCAGCTCGTGGCACAGAAGGTGCCATTTCAGCTGTTTCATAA 2973 0.4494 MADLASLGNAGCDTEQISKDKIDAEVWIAGLKALISSGQGGRITLSDGQDRELTTSVMIGIMDLTSSSPSESPSNMQAKGSSSDVFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVITENVMGVGEDKVFNHFSPRVDVLLPRPLESNVVLDVHHIACGVKHAALVTRQGEVFTWGEESGGRLGHGVEKNVVQPRLVEALASTTVDFVACGEFHTCAVTMAGELYSWGDGTHNAGLLGHGTDISHWIPKRISGLLDGLQVAFVTCGPWHTALITSIGQLFTFGDGTFGVLGHGDRENVSYPREVQSLSGLRTITVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPLLIDHNFYKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVEDNLSEEFVEEIACGAYHVAVLTSKNEVFTWGKGANGRLGHGDVEDRKAPTLVEALKDRHVKNIACGSNYSAAICLHKWVSGAEQSQCSTCRQPFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFVKLTKVAEAGINNRRNAMPRLSGENKDRLDKSEIRLAKSPVPSNVDLIKLLDSKAARQGKKTDTFSLAPTSQAPLLQLKDVVLSTAVEMRRTTPRPVLTSSAVSSRSVSPFSRKPSPPRSATPVPTTSGLSFSKSINDSLKKTNELLNHEVLKLRTQVESLRKRCDLQELELQRAEKRTQEAMAVAAEESAKSKAAKEVIKSLTVQLKNLAERLPPGAYETDSIRPAYVPNGSEPNGIHYPGTNGEGHTRAESISGSSLASFAFESSLFNKTEVTGTYATNPYQQSRVPGPSNGTNEYPNVVLANGGLFQATSSSILDMADGRNSGLLQDGESGSRSRSAVLAANSNQVEAEWIEQYEPGVYITLTALSDGSRDLKRVRFSRRRFGEHQAETWWSENREKVYDRYNVRSSTEKSSSQAARGTEGAISAVS 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3479 990 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 17 769 - -
Mibi01g3479 990 SUPERFAMILY FYVE/PHD zinc finger 498 568 IPR011011 -
Mibi01g3479 990 FunFam Putative E3 ubiquitin-protein ligase HERC1 504 572 - -
Mibi01g3479 990 SMART fyve_4 496 565 IPR000306 GO:0046872
Mibi01g3479 990 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 570 IPR013083 -
Mibi01g3479 990 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 394 445 IPR000408 -
Mibi01g3479 990 Pfam Transcription factor BRX N-terminal domain 748 781 IPR027988 -
Mibi01g3479 990 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 224 278 IPR000408 -
Mibi01g3479 990 MobiDBLite consensus disorder prediction 654 675 - -
Mibi01g3479 990 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 265 275 IPR000408 -
Mibi01g3479 990 MobiDBLite consensus disorder prediction 64 103 - -
Mibi01g3479 990 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 279 330 IPR000408 -
Mibi01g3479 990 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 446 497 IPR000408 -
Mibi01g3479 990 Coils Coil 753 773 - -
Mibi01g3479 990 Pfam FYVE zinc finger 498 564 IPR000306 GO:0046872
Mibi01g3479 990 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 172 223 IPR000408 -
Mibi01g3479 990 PRINTS Chromosome condensation regulator RCC1 signature 383 401 IPR000408 -
Mibi01g3479 990 PRINTS Chromosome condensation regulator RCC1 signature 174 190 IPR000408 -
Mibi01g3479 990 PRINTS Chromosome condensation regulator RCC1 signature 441 462 IPR000408 -
Mibi01g3479 990 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Mibi01g3479 990 PRINTS Chromosome condensation regulator RCC1 signature 281 295 IPR000408 -
Mibi01g3479 990 PRINTS Chromosome condensation regulator RCC1 signature 224 240 IPR000408 -
Mibi01g3479 990 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 502 564 IPR017455 -
Mibi01g3479 990 Pfam Regulator of chromosome condensation (RCC1) repeat 341 388 IPR000408 -
Mibi01g3479 990 Pfam Regulator of chromosome condensation (RCC1) repeat 279 327 IPR000408 -
Mibi01g3479 990 Pfam Regulator of chromosome condensation (RCC1) repeat 447 494 IPR000408 -
Mibi01g3479 990 Pfam Regulator of chromosome condensation (RCC1) repeat 393 442 IPR000408 -
Mibi01g3479 990 Pfam Regulator of chromosome condensation (RCC1) repeat 172 220 IPR000408 -
Mibi01g3479 990 Pfam Regulator of chromosome condensation (RCC1) repeat 224 275 IPR000408 -
Mibi01g3479 990 Pfam Transcription factor regulating root and shoot growth via Pin3 910 965 IPR013591 -
Mibi01g3479 990 FunFam PH, RCC1 and FYVE domains-containing protein 1 81 331 - -
Mibi01g3479 990 Coils Coil 697 738 - -
Mibi01g3479 990 MobiDBLite consensus disorder prediction 64 102 - -
Mibi01g3479 990 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 317 327 IPR000408 -
Mibi01g3479 990 FunFam PH, RCC1 and FYVE domains-containing protein 1 332 503 - -
Mibi01g3479 990 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 110 171 IPR000408 -
Mibi01g3479 990 Gene3D - 335 510 IPR009091 -
Mibi01g3479 990 Gene3D - 52 334 IPR009091 -
Mibi01g3479 990 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 158 168 IPR000408 -
Mibi01g3479 990 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 342 393 IPR000408 -
Mibi01g3479 990 MobiDBLite consensus disorder prediction 654 692 - -
Mibi01g3479 990 CDD FYVE_like_SF 507 560 - -
Mibi01g3479 990 MobiDBLite consensus disorder prediction 968 983 - -
Mibi01g3479 990 ProSiteProfiles BRX domain profile. 911 966 IPR013591 -
Mibi01g3479 990 MobiDBLite consensus disorder prediction 966 990 - -
Mibi01g3479 990 SUPERFAMILY RCC1/BLIP-II 109 499 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3479 Mibi-ChrMibi01 60836670 60842960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3479 912 980 Major Intrinsic Protein MIP AT1G31880 46.377 7.54e-14 72.4