Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3390 ATGGTCTTAGATGAAGCAGACAGGCTGTTGAATGAGGATTTTGAGGAATCTCTCATGAAGATTTTGCAAACTATCCCGAAACAAAGAAGAACATTTCTATTTTCTGCTACAATGACCAATAAGGTTGAGAAACTCCAAAAGCTTAGTTTAAGGAATGCTGTAAAGATCGAAGCAGCGTCTAAATACTCTACTGTTGACACACTGAAGCAGTTTTATCACTTTTTGCCTGCTAAGCACAAGGATTGCTACTTTGTTCATATACTGCTTGAAATGGCTGGAAGCACATCAATGGTTTTCACACGCACATGTGATGCAACCCAGCTACTGGCTTTGACTTTAAGAAATTTGGGGTTGAAAGCCATCCCCCTTAATGGTCATTTGAGCCAGAGAATTGGAGCCTTGAATAAGTTCAAGTCCGGAGATTGCAATATCCTCGTTTGTACTGATGTGGCTAGTAGAGGGCTGGACATTCCAACAGTAGATGTGGTTATCAACTATGATGTTCCAACAAACTCCAAGGATTATAATCATCGAGTGGGAAGAACTGCCCGTGCTGGGCGATCTGGGGTTGCCATTTCCCTTGTAAATCAATATGAGCTGAATCCGTTCCTTGCTATAGAGAACCGTATAGGAACACTGTTGAAACGCAAAAATACAAATGTCTTAGGCATGAAGTTACCAGAGTATCCTGCGCGGGAAGAGGAAGTTCTTCTTCTGAAAGAGCGTGTTTGTGAGGCCATAAGATTAGCTGTAATGATTATGAAAGAGAATGGAGAGAAGAGGAGATACCTGGGAGAAGACCATGAAGAAGGAGATACGGAGAATTATTTAGACCTCAAGGATAAAAAACCTTCCTGGAAGTACAAGAGAATATGAACACTGTTGAAACGCAAAAATACAAATGTTTTAGATATGAAGTTGCCAGAGTATCCTGCGCAGGAAGAGGAAGTTCTTCTTATGAAAGAGCGTGTTTGTGAGGCCAGAAGATTAGCTGTAACGAGTATGAAAGAGAATGGAGAGAAGAGCAGATACCGGGGAGAAGACCATGAAGAAGGAGCCACGTCCAAACATTTAGGCCACAGGGATAGAAAACCTTCCAAGAAGTACAAGATCCGAAAGCTATTGTATGCGGGTAGTTACGTTATCTATCTTTAA 1155 0.4147 MVLDEADRLLNEDFEESLMKILQTIPKQRRTFLFSATMTNKVEKLQKLSLRNAVKIEAASKYSTVDTLKQFYHFLPAKHKDCYFVHILLEMAGSTSMVFTRTCDATQLLALTLRNLGLKAIPLNGHLSQRIGALNKFKSGDCNILVCTDVASRGLDIPTVDVVINYDVPTNSKDYNHRVGRTARAGRSGVAISLVNQYELNPFLAIENRIGTLLKRKNTNVLGMKLPEYPAREEEVLLLKERVCEAIRLAVMIMKENGEKRRYLGEDHEEGDTENYLDLKDKKPSWKYKRIXTLLKRKNTNVLDMKLPEYPAQEEEVLLMKERVCEARRLAVTSMKENGEKSRYRGEDHEEGATSKHLGHRDRKPSKKYKIRKLLYAGSYVIYL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3390 384 SMART helicmild6 107 186 IPR001650 -
Mibi01g3390 384 Pfam Helicase conserved C-terminal domain 83 186 IPR001650 -
Mibi01g3390 384 Pfam DEAD/DEAH box helicase 1 45 IPR011545 GO:0003676|GO:0005524
Mibi01g3390 384 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 2 10 IPR000629 -
Mibi01g3390 384 MobiDBLite consensus disorder prediction 336 363 - -
Mibi01g3390 384 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 56 IPR014001 -
Mibi01g3390 384 Gene3D - 65 222 IPR027417 -
Mibi01g3390 384 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 364 - -
Mibi01g3390 384 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 67 237 IPR001650 -
Mibi01g3390 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 200 IPR027417 -
Mibi01g3390 384 Gene3D - 1 64 IPR027417 -
Mibi01g3390 384 CDD SF2_C_DEAD 68 195 - -
Mibi01g3390 384 MobiDBLite consensus disorder prediction 336 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3390 Mibi-ChrMibi01 59343017 59349508 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3390 1 221 Eukaryotic Initiation Factors Gene Family AT3G19760 28.761 2.02e-27 110