Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3345 ATGGTGAGGGGAAAGGTTGAAATGAAAAGGATAGAGAATGCAGCAAGCCGTCAAGTAACGTTTACAAAGAGAAGAAGTGGGCTTCTAAAGAAAGCCTATGAGCTATCTGTTCTTTGTGACGCCCAAGTAGCTGTCATTATCTTCTCTCAAAGAGGCAGACTCTATGAGTTCTCAAGTCCTGACATTAGAAAGATTTTGGAGCGATACTGGAGATACAACAAAGGCGATCAGCTGGAAAACAACTTTGAAGATGAACAATGCAGTCAGATGCATATGCAGCAAATGAAGGTTCAATGTGCAATCATGGCCAAGAAGGTTGAGCATCTTCGAATTTGTCAAAGGAAACTAATGGGAGAAGAGTTGAGTTCATGTTCAGTTGAAGAACTCAAAGAAATAGAGAATCAGCTCACCACTAGTTTACAAAAAGTCAGGCTTCGAAAGAGTCAGCTATTCCGACAGCACATTCAGCAACTTCAAGACAAGGATAAAAATGTGGTCCAAGAGAACGCCGGCTTAACTAAATTGAACTGTGATTTCTTGATGCAGTGTGGAAGAATACAATCACAGAAGCAATGGGCTAATAAGCACAAAGAAGAAGTAGAAACAGAGTTATGTATTGGACTCCCCTCACAAAATCGATGTTCATAG 648 0.4059 MVRGKVEMKRIENAASRQVTFTKRRSGLLKKAYELSVLCDAQVAVIIFSQRGRLYEFSSPDIRKILERYWRYNKGDQLENNFEDEQCSQMHMQQMKVQCAIMAKKVEHLRICQRKLMGEELSSCSVEELKEIENQLTTSLQKVRLRKSQLFRQHIQQLQDKDKNVVQENAGLTKLNCDFLMQCGRIQSQKQWANKHKEEVETELCIGLPSQNRCS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3345 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi01g3345 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi01g3345 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi01g3345 215 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Mibi01g3345 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi01g3345 215 Pfam K-box region 89 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi01g3345 215 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
Mibi01g3345 215 ProSiteProfiles K-box domain profile. 92 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi01g3345 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Mibi01g3345 215 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Mibi01g3345 215 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Mibi01g3345 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi01g3345 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi01g3345 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3345 Mibi-ChrMibi01 58716437 58722276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3345 1 208 MADS-box Gene Family AT5G51860 47.115 1.98e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi01g3345 K-box 5.7e-21 No_clan