Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3331 ATGGATAACAGTAGTAATCCTCTTACTACTGCACCTCCTACTCCTAATCCTGAACAAGCTTCTTTCTCTTCTTCTTTGCCTTCTCCTCCTGTTGTACAAGTTCCTTCATCTAATGACTCTTTCTTGTCATCTCCTAGGACACTGAGATCATCGCCTCGGGGACTACATACGAGCCGGAGGCATGCAACTTTCCGGGGAATACGAAGCCGTAGCGGCAAATGGGTGTGTGAGATACGTGAGCCTCGTAAAACCTCACGCATTTGGCTCGGAACTTATCCGACTCCGGAGATGGCGGCCGCCGCCTATGACGTGGCGTCCCTAGCATTGAAGGGCCCCGACACTAGCCTCAACTTCCCCAGTTTGATCCTCTCCTACCCGATCCCCGCCTCATCGTCCGCCTCCGATATCCGGGCCGCCGCCTCCGCCGCCGCCAAGGACCGGATTGTCCGGTCCCCCAGCGAAGCCACGGCGGAGAAGAGTAGTGAGGAGTTCATAGATGAGGATGAGTTGTTGAATATGCCTAGCTTGTTGGATGACATGGCAATGGGAATGCAGGTTAGTCCTCCCAGGAAGTCTCCTTATCCTTCTGATGATTCTCCGCCGCATGATTCAGATCATGGCGATGGCCTCTGGACTTTTTGA 642 0.5374 MDNSSNPLTTAPPTPNPEQASFSSSLPSPPVVQVPSSNDSFLSSPRTLRSSPRGLHTSRRHATFRGIRSRSGKWVCEIREPRKTSRIWLGTYPTPEMAAAAYDVASLALKGPDTSLNFPSLILSYPIPASSSASDIRAAASAAAKDRIVRSPSEATAEKSSEEFIDEDELLNMPSLLDDMAMGMQVSPPRKSPYPSDDSPPHDSDHGDGLWTF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3331 213 MobiDBLite consensus disorder prediction 1 61 - -
Mibi01g3331 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 42 184 - -
Mibi01g3331 213 SUPERFAMILY DNA-binding domain 64 120 IPR016177 GO:0003677
Mibi01g3331 213 Pfam AP2 domain 65 111 IPR001471 GO:0003700|GO:0006355
Mibi01g3331 213 SMART rav1_2 63 125 IPR001471 GO:0003700|GO:0006355
Mibi01g3331 213 Gene3D AP2/ERF domain 63 120 IPR036955 GO:0003700|GO:0006355
Mibi01g3331 213 MobiDBLite consensus disorder prediction 146 213 - -
Mibi01g3331 213 CDD AP2 64 119 IPR001471 GO:0003700|GO:0006355
Mibi01g3331 213 MobiDBLite consensus disorder prediction 1 52 - -
Mibi01g3331 213 ProSiteProfiles AP2/ERF domain profile. 51 119 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3331 Mibi-ChrMibi01 58544106 58544747 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3331 49 213 AP2-EREBP Transcription Factor Family AT5G52020 54.891 3.38e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi01g3331 AP2 3.9e-10 CL0081