Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3306 ATGGCTTTTCCTTCCAATCTTCCTCTTCTCCTCCTTCATTACCTCTTCTGTTTCCTCGCTTTTGCTCTCACTACACATCAAACCGATGAAAACCCAGATAAAATTCACCTCCTTTCTTTCAAAACCAGCCTCCACAACCCCCAACTTCTTCCTTCGTGGAACCTCTCAACCCCTCACTGCAACTGGGTTGGCGTTACTTGCAAACTCGGCCGAGTCACCTCACTTTCTCTCCCCACTCTGCAACTCGAAGGCCCTCTCTCTCCCTCCCTCTTCTCCCTCACCACCCTCACCGTCCTTAACTTATTCTCCAACTCTCTCTCTGGCCACATCCCTCCACAGATAGACAATCTCAAAAACTTGAAGGAACTTAATCTTAGTTATAATCACTTCTCTGGCGAAATCCCAAAGGAGTTCACCGGTTTGAATCAGCTCACATCTCTTGCTCTCAGCACTAACCTTTTCACCGGAAAAATCCCTCAAGAGATTGGGACGTTGTCAAACCTCAGAGTTCTTGATCTCTCTGGTAATGAACTCACCGGAAGTGTGCCTGAAAGCATTGGAAATTTGAGTCAGCTTCAGTTTCTTGACCTCAGTAATAATCTTCTCTCAGGTTATTTACCATTGACTCTTTTCACGGGGACATTGTCTTTGATTTCTGTTGACGTTTCGAACAATTCGTTTTCTGGTTCTCTGCCGCCGGAAATTCGTAACCTGAGGAATTTAACTGCGCTTTACATTGCGTCTAATAAGTTTACGGGTAAGTTGCCTCGTGAGGTTGGCGAGCTTTCGAGGCTTCAGGTGCTTTATGCGCCTTCTAGTTCTATTGAAGGTCCATTGCCTGAAGAAATGTCGAAACTTAAGTCATTGTCTAATCTTGACCTTTCTTACAACCCCTTGAAGTGTTCTATACCGAAGTTCATTGGGAAGCTTCAGAATTTGAGATTGCTAGACCTTTCTTTTGCTCAGCTTACTGGCTCCATACCGTCTGAGCTTGGAAATTGCAGAAACTTGAGTTCTGTGATGCTTTCTTTCAACTCTCTTTCTGGTTCATTGCCAGAGGAGCTTTCTGAGCTTCCCATGGTGTCATTCATAGCTGAGAGGAATCAGTTTCATGGGATTTTGCCTGCTTGGCTGGGGAAGTGGAGTCACATTGACACTCTTTTGCTCTCACAGAACAGATTTTCTGGGGAAATTCCTCCCGAGCTTGGGAATTGCTCTTCATTGGAGCACCTCAGCTTGAGAAGTAACTTGCTGACAGGTCCCGTACCTGAGGAGCTGTGTGATGCCGCTTCACTTTTGGAGATTGACTTTGATGATAACCTCCTTACGGGCAGAATTGAGAAAGCATTTGTTAGGTGTAAGAACCTTGTCCAGTTAGAATTGATGAAGAATCAGATCACTGGTTCTATCCCCCATTACCTTTCTGAGCTTCCTTTGATGGTGCTTGACCTTGATTCAAACAATTTTAGTGGAAGCATACCTTCAAGTCTGTGGGGTTCATCAACTCTAATGGAGTTTTCTGCTGCAAATAACCATCTTCAGGGCTCTCTCCCTGCTGAGATTGGGAATGCAGTTACTCTAGAGAGGCTTGTCCTTAACAACAATCAACTGACGGGTACTATACCCAAGGAAATTGGAAATCTCACAAGTCTATCTGTTCTTAATTTGAATGGAAACCTTCTTGAAGGGAATATCCCTTCTGAGCTAGGAGATTGCACTTCATTGACAACCTTAGACCTTGGAAATAATCGGCTGAATGGATCTATTCCAGATGAAATAGTGGAACTGAGCCAATTACAGTGTCTGGTTCTGTCCCATAATAATCTTTCTGGGTCTATTCCAGCAAAAGGATCTTCATATTTTAGCAGAATTGCCATCCCTGATTCGAGCTATGTTCAGCACCTTGGAGTTTATGATCTGTCCCATAACAAATTGTCTGGGACTATACCTGATGAACTGGGGAGCTGTATGGTCGTTGTGGATCTTTTGCTCAGCAACAACATGCTTTCTGGGAGTATCCCAAGCTCACTCTCTCGCCTGACCAATCTTACAACTCTGGATTTGTCTGGTAACTCCTTGTCAGGTTCCATTCCACCAGAACTTGGGGATTCCCTCAAGCTACAAGGACTATATCTGGGACATAATCAGCTTAATGGCACTATCCCTGAAAGTTTTGGGAAAATGAGGAGTTTGGTGAAGCTGAATTTGACGGGAAATAAGTTGACTGGTCCGATTCCAATTAGCTGTGGGAACATGAAGGAGCTGAGTCACGTGGATTTGAGCTCTAATGAGCTTACTGGCCAGCTTCCATCCTCTCTATCAGGTCTTCAAAGCCTTGTTGGTCTTTATGTGCAGGAGAACAAGCTTTCTGGCCAAATAGAGATGCTCTTCTCCAATGTAATGACATGGAGGATTGAGACAATGAATCTGAGCGCCAATTGCTTCGACGGGAATTTGCCAAGTTCTTTGGGAAACCTTTCTTACTTGACAAATTTGGATGTCCATGGAAATATGTTCTCTGGAGAGATTCCATTGGATCTTGGGAATCTAGTGCAGATGGAGTATCTCGATGTTTCTGGGAACAGATTATATGGAAAGATTCCTGAGAAAATTTGCAGCCTAGTTAATCTGAACTACCTTGATTTGTCTCAAAACAGATTGGAAGGGCCCATACCCAGAAGTGGTATTTGCCGGAACCTATCAAGAGTTAGACTTACAGGAAACAAAAATCTTTGTGGACGGATTTTGGGTGTCAATTGCCCAATCAAAAGCATTGGTAGATTTTCATTGACTAATGTGTGGCAGCTTGCGGCGATTGCCATTACAATCACACTGATGATTCTGAGCGTTGCATTTGTTCTACACAGATGCATTGGCAGGAGGCAAAATGATCCAGAAGACCTTGAGGAACACAAGCTAAACAACTACGTGGATCAGAATCTCTATTTCTTGAGCAGTAGCAGATCAAAGGAACCACTGAGTATAAATGTTGCAATGTTTGAGCAGCCTCTTCTGAAACTAACCTTGGAGGATATCATAGAGGCTACCGGCAACTTCAGCAAAACCAACATCATTGGAGATGGAGGTTTTGGGACTGTGTACAAGGCTACTCTGCCCAATGGCAAAACAGTTGCAGTGAAGAAGCTGAGCGAAGCTAAAACGCAGGGCCACCGTGAGTTCATGGCTGAAATGGAAACTTTAGGCAAGGTGAAGCATCAGAATCTTGTTCCACTCCTTGGCTATTGCTCCTTGGGTGAAGAGAAACTCCTTGTTTATGAATACATGGTGAATGGAAGCTTAGATCTTTGGCTGAGAAACAGGACTGGTGGAGCCCTTGAAGTCCTTGACTGGAACAAAAGGTACAAAATTGCAACTGGTGCAGCCAGAGGATTAGCTTTCCTTCATCATGGGTTCATCCCCCACATCATTCACAGAGACATCAAAGCAAGCAACATATTGCTTAATGAAGATTTTGAGCCTAAAGTTGCGGACTTTGGACTTGCTAGGCTTATCAGTGCCTGTGAATCACACATCACCACTGACATTGCTGGAACATTTGGGTACATTCCACCGGAGTATGGACAGAGTGGGAGGTCAACAACAAGAGGGGATGTCTATAGTTTTGGGGTCATTATGCTTGAGCTCGTGACTGGAAAAGAACCAACAGGGCCTAATTTTAAAGACATTGAAGGTGGGAATCTGGTGGGGTGGGTTTTTCTGAAGATCAAGAAGGGACAGGCTGCTGATGTTCTTGATCCAAAGGTTCTGGACGCCGATTCGAAGCCTATGATGCTTCGGATGCTGCAGATTGCTTGTGTGTGCCTCTCTGATAATCCTGCAAACAGGCCTACCATGCTTCAGGTGCTCAAGCTTTTGAAGGGGATCAAAGGAGAGTAG 3897 0.4442 MAFPSNLPLLLLHYLFCFLAFALTTHQTDENPDKIHLLSFKTSLHNPQLLPSWNLSTPHCNWVGVTCKLGRVTSLSLPTLQLEGPLSPSLFSLTTLTVLNLFSNSLSGHIPPQIDNLKNLKELNLSYNHFSGEIPKEFTGLNQLTSLALSTNLFTGKIPQEIGTLSNLRVLDLSGNELTGSVPESIGNLSQLQFLDLSNNLLSGYLPLTLFTGTLSLISVDVSNNSFSGSLPPEIRNLRNLTALYIASNKFTGKLPREVGELSRLQVLYAPSSSIEGPLPEEMSKLKSLSNLDLSYNPLKCSIPKFIGKLQNLRLLDLSFAQLTGSIPSELGNCRNLSSVMLSFNSLSGSLPEELSELPMVSFIAERNQFHGILPAWLGKWSHIDTLLLSQNRFSGEIPPELGNCSSLEHLSLRSNLLTGPVPEELCDAASLLEIDFDDNLLTGRIEKAFVRCKNLVQLELMKNQITGSIPHYLSELPLMVLDLDSNNFSGSIPSSLWGSSTLMEFSAANNHLQGSLPAEIGNAVTLERLVLNNNQLTGTIPKEIGNLTSLSVLNLNGNLLEGNIPSELGDCTSLTTLDLGNNRLNGSIPDEIVELSQLQCLVLSHNNLSGSIPAKGSSYFSRIAIPDSSYVQHLGVYDLSHNKLSGTIPDELGSCMVVVDLLLSNNMLSGSIPSSLSRLTNLTTLDLSGNSLSGSIPPELGDSLKLQGLYLGHNQLNGTIPESFGKMRSLVKLNLTGNKLTGPIPISCGNMKELSHVDLSSNELTGQLPSSLSGLQSLVGLYVQENKLSGQIEMLFSNVMTWRIETMNLSANCFDGNLPSSLGNLSYLTNLDVHGNMFSGEIPLDLGNLVQMEYLDVSGNRLYGKIPEKICSLVNLNYLDLSQNRLEGPIPRSGICRNLSRVRLTGNKNLCGRILGVNCPIKSIGRFSLTNVWQLAAIAITITLMILSVAFVLHRCIGRRQNDPEDLEEHKLNNYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLEDIIEATGNFSKTNIIGDGGFGTVYKATLPNGKTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTGGALEVLDWNKRYKIATGAARGLAFLHHGFIPHIIHRDIKASNILLNEDFEPKVADFGLARLISACESHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVIMLELVTGKEPTGPNFKDIEGGNLVGWVFLKIKKGQAADVLDPKVLDADSKPMMLRMLQIACVCLSDNPANRPTMLQVLKLLKGIKGE 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3306 1298 Gene3D Phosphorylase Kinase; domain 1 982 1094 - -
Mibi01g3306 1298 SUPERFAMILY L domain-like 44 361 - -
Mibi01g3306 1298 ProSiteProfiles Protein kinase domain profile. 1019 1298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g3306 1298 Gene3D Ribonuclease Inhibitor 512 621 IPR032675 -
Mibi01g3306 1298 FunFam serine/threonine-protein kinase BRI1-like 2 1095 1298 - -
Mibi01g3306 1298 FunFam Leucine-rich repeat receptor-like kinase 33 142 - -
Mibi01g3306 1298 SUPERFAMILY RNI-like 367 611 - -
Mibi01g3306 1298 ProSiteProfiles Leucine-rich repeat profile. 682 704 IPR001611 GO:0005515
Mibi01g3306 1298 Gene3D Ribonuclease Inhibitor 214 363 IPR032675 -
Mibi01g3306 1298 Gene3D Ribonuclease Inhibitor 622 923 IPR032675 -
Mibi01g3306 1298 ProSitePatterns Protein kinases ATP-binding region signature. 1025 1048 IPR017441 GO:0005524
Mibi01g3306 1298 SUPERFAMILY L domain-like 630 913 - -
Mibi01g3306 1298 FunFam serine/threonine-protein kinase BRI1-like 2 980 1094 - -
Mibi01g3306 1298 FunFam Leucine-rich repeat receptor protein kinase EMS1 362 621 - -
Mibi01g3306 1298 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 143 209 - -
Mibi01g3306 1298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1142 1154 IPR008271 GO:0004672|GO:0006468
Mibi01g3306 1298 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 677 1293 - -
Mibi01g3306 1298 SMART LRR_sd22_2 165 191 - -
Mibi01g3306 1298 SMART LRR_sd22_2 453 479 - -
Mibi01g3306 1298 SMART LRR_sd22_2 572 598 - -
Mibi01g3306 1298 SMART LRR_sd22_2 752 778 - -
Mibi01g3306 1298 SMART LRR_sd22_2 680 712 - -
Mibi01g3306 1298 SMART LRR_sd22_2 850 876 - -
Mibi01g3306 1298 SMART LRR_sd22_2 286 315 - -
Mibi01g3306 1298 SMART LRR_sd22_2 93 119 - -
Mibi01g3306 1298 Gene3D Ribonuclease Inhibitor 141 213 IPR032675 -
Mibi01g3306 1298 SUPERFAMILY Protein kinase-like (PK-like) 1000 1292 IPR011009 -
Mibi01g3306 1298 Pfam Leucine rich repeat 526 585 IPR001611 GO:0005515
Mibi01g3306 1298 Pfam Leucine rich repeat 143 202 IPR001611 GO:0005515
Mibi01g3306 1298 Gene3D Ribonuclease Inhibitor 33 140 IPR032675 -
Mibi01g3306 1298 FunFam leucine-rich repeat receptor protein kinase EMS1 212 361 - -
Mibi01g3306 1298 Gene3D Transferase(Phosphotransferase) domain 1 1095 1298 - -
Mibi01g3306 1298 SMART LRR_typ_2 117 140 IPR003591 -
Mibi01g3306 1298 SMART LRR_typ_2 238 262 IPR003591 -
Mibi01g3306 1298 SMART LRR_typ_2 632 656 IPR003591 -
Mibi01g3306 1298 SMART LRR_typ_2 752 776 IPR003591 -
Mibi01g3306 1298 SMART LRR_typ_2 310 334 IPR003591 -
Mibi01g3306 1298 SMART LRR_typ_2 548 572 IPR003591 -
Mibi01g3306 1298 SMART LRR_typ_2 680 704 IPR003591 -
Mibi01g3306 1298 SMART LRR_typ_2 874 899 IPR003591 -
Mibi01g3306 1298 SMART LRR_typ_2 165 188 IPR003591 -
Mibi01g3306 1298 SMART LRR_typ_2 93 116 IPR003591 -
Mibi01g3306 1298 SMART LRR_typ_2 189 213 IPR003591 -
Mibi01g3306 1298 SMART LRR_typ_2 596 620 IPR003591 -
Mibi01g3306 1298 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Mibi01g3306 1298 CDD STKc_IRAK 1025 1295 - -
Mibi01g3306 1298 SMART serkin_6 1019 1292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g3306 1298 PRINTS Leucine-rich repeat signature 683 696 - -
Mibi01g3306 1298 PRINTS Leucine-rich repeat signature 874 887 - -
Mibi01g3306 1298 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 628 924 - -
Mibi01g3306 1298 Pfam Leucine Rich Repeat 119 141 IPR001611 GO:0005515
Mibi01g3306 1298 Pfam Leucine Rich Repeat 682 701 IPR001611 GO:0005515
Mibi01g3306 1298 Gene3D Ribonuclease Inhibitor 364 511 IPR032675 -
Mibi01g3306 1298 Pfam Protein tyrosine and serine/threonine kinase 1022 1291 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3306 Mibi-ChrMibi01 58133863 58137759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3306 72 425 Receptor kinase-like Gene Family AT5G07280 36.066 1.21e-50 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Mibi01g3306 PK_Tyr_Ser-Thr 3.8e-45 CL0016