Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3301 ATGATCCAAACCAGACGATCTCATTCCACATGTTCTCACAGCCGCCTACTCTTCCTCCTCCTCTCGACGGCGTACATCTCCGGCAGCGGCGCCGTCCCACACTCAGCCACAGCGCCGTCGCCGTCGATGTCTCCGGCCGACGTGGACCTCGCGATTTTCATGAAGGCGACGGCCGTCGTATGCGCCGTCATCTTCATCACCATCTTCTCGGTCTACCTCAATTTCTGGACGGCGCTAATCTTCGCCGGCCAGAACAACTTCGCCGGCGGCGGCCGTGACGGCGGCGTGAGTTGGCGGTGTTCTTGCTCTCGAGGAATCGATCGGGAAATCCTGGACACATTTCCGATTATGGTGTATTCCACCATAAAGAACCACAAGATCGGAAAAGGAGATCTGGAATGCGCGGTGTGCTTGAGCGAATTCGAAGATAATGAGACTCTGCGACTGATTCCGAAATGCAATCATGTGTTTCATACGGAGTGTATTGATGTGTGGTTAGGTTCTCATGTGACTTGTCCTCTCTGTCGCGCAGATCTGAGATTTGATTCCGGCGAAGTAGACATCGGAATTCCAACGACGCAGTTGAACGCCGGTGATGAATTGAACGACGAAGGAAGCAGCAGGAGAGATGAAGTGATGAATGAAACACAGCATCACCAAGTAGAGCAGGTGCCAAACGAAGTCGGCCCAAGCAGCAGCAACACTGCAGGAACAGAAAGAAGAAACAACAATGTGGAGGAAGGCAAAGATAAGCAAAGTAGGAATAGGAGATCGAGATGGAGAATGTTCGAGAAGCTTCCAAGATCCAATTCAACTGGACATTCTTTTTCAACGACGAATGACACAGAGAGGTATACACTAAGGTTGCCGGAGGAGGTGAGGAGGTACATTCTGATGAATCATGCGGCAATAGGGCGGTCGGTGAGCTACCATGGGGTGGCGCCGGTGAAAGGGGTGGCTTGGAGTGACAGTGACGATGGAAGTAGCAGAGGGAAGAGGAACATGATGACACCTCCCTTTGTTCATCACAAGGATTAA 1038 0.5183 MIQTRRSHSTCSHSRLLFLLLSTAYISGSGAVPHSATAPSPSMSPADVDLAIFMKATAVVCAVIFITIFSVYLNFWTALIFAGQNNFAGGGRDGGVSWRCSCSRGIDREILDTFPIMVYSTIKNHKIGKGDLECAVCLSEFEDNETLRLIPKCNHVFHTECIDVWLGSHVTCPLCRADLRFDSGEVDIGIPTTQLNAGDELNDEGSSRRDEVMNETQHHQVEQVPNEVGPSSSNTAGTERRNNNVEEGKDKQSRNRRSRWRMFEKLPRSNSTGHSFSTTNDTERYTLRLPEEVRRYILMNHAAIGRSVSYHGVAPVKGVAWSDSDDGSSRGKRNMMTPPFVHHKD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3301 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 41 271 - -
Mibi01g3301 345 MobiDBLite consensus disorder prediction 242 264 - -
Mibi01g3301 345 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Mibi01g3301 345 CDD RING-H2_EL5_like 133 176 - -
Mibi01g3301 345 SMART ring_2 134 175 IPR001841 -
Mibi01g3301 345 MobiDBLite consensus disorder prediction 202 217 - -
Mibi01g3301 345 Pfam Ring finger domain 133 176 IPR001841 -
Mibi01g3301 345 MobiDBLite consensus disorder prediction 190 279 - -
Mibi01g3301 345 MobiDBLite consensus disorder prediction 322 345 - -
Mibi01g3301 345 MobiDBLite consensus disorder prediction 218 241 - -
Mibi01g3301 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 183 IPR013083 -
Mibi01g3301 345 SUPERFAMILY RING/U-box 125 186 - -
Mibi01g3301 345 FunFam E3 ubiquitin-protein ligase ATL6 96 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3301 Mibi-ChrMibi01 58094576 58096906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3301 16 300 Rapid Response to Elicitors AT3G05200 34.722 4.38e-47 162