Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3295 ATGGGTGTGAAGCATTTGTGGGATATACTCGAATCCTGCAAGAAAACTGTTCCACTTCACCATCTCCAGAACAAGAGGGTATGCGTAGATCTATCATGTTGGATAGTTCAACTTCAGAATGTGGGCAAATCAATCCCATGCGCGAAGGATAAACTCCACCTCAGGGGTCTCTTTCATCGCATTAGAGCTCTCATTGCTTTGAATTGCAGCCTTATTTTTGTTACAGATGGATCAATTCCTGCCATTAAATTATCAACTTATAGGCAACGATTAAACTCTGGAAAAGATGTAGCACAAAACGAAACCAACTTACATAAAATGGCTTCTTTGCCGAGGAATATGGGATCTGAGTTTTCATGCATGATAAAAGAGGCTCGCATCTTGGGAATGGCTCTTGGCATCCCTTGTCTGAACGGGATCGAAGAAGGTGAAGCTCAATGTGCTTTGTTGAACTCCGAATTATTGTGTGATGGATGTTTCAGTTCAGATTCAGACATCTTTCTTTTTGGTGCAAGGACAGTTTATAGGGATATCTGCCTCGGAGATGGTGGATATGTTATTTGCTATGAGATGGAAGACATTGAAAGAAAACTTGGTTTTGGAAGGGACTCACTGATTGCTCTTGCCTTGCTTCTTGGGAGTGATTATAGTCCAGGAGTTTATGGTCTAGGTCCGGAGTCAGCTTGTCAGATAGTTAGATCAATTGGTGACAAATGTGTGCTACAAAAATTTGCTTCTGAAGGAATTGAATGTCTGAAAAGACTGAAGGGTGCAAAGAAGTCGGGGCAAGTTTTCAAGAACTACAACAAAGAAAATGTGTTGGACCATGATATGGCATTGAATCATGGAGGCACGAACAATTCACAAAGAGATTGTAACTTCTTGCAAGTTATCAATGCTTATGTGAAGCCAAAATGCCACCCAGCAGATTCTGATATTGTGATGAGGGTTCTTGCTCAGTACCCATTTCAACGTAGTAAACTCCAGCAGATATGTGCGGAATTCTTTCAGTGGCCTCCGGAGAAAACAGATGAGTATATCCTTCCAAAGGTAGCTGAAAGGGATCTACGACGATTTGCCAATTTGCGCTTAACCTCATCAGAAGTAGGAGCGAATCTTCCTTTGAATGAGATCCCAGTAAAGTGTCCCGTCTCAGAAATCATCAAGTATCGAAAAGTTCAAGGAAGAGAATCCTTTGAGGTGTCATGGAATGAAATGGACGGGCTTGGAACGTCAATAGTACCATCAGATCTTTTAGAAAGTGCTTGTCCTGAGAAGATTTCGGAGTTTGAGGAGAAAAAAGGTCGGCTTAAGAAACAAAATGCTCAAAAGAGAAGACCAAAGAAAACTGAAACTGCACCATCATCATCTTCTATGGCTGAACTTGACAGGAAACTGATGAATCTGTCACTGGATATCAATCTGGGAGACCATGCAAATCAAAATGCCTCGGATTCATCAGAACAGGTATCTCAAGATGCATCTGCCATGGATGAAGCTTATCTGAATAACAGAGAGTTGTCATATACATCACATGACGAACAGATTGATTGGGATCAAAATGAGAGCAGCAACACATTTGAGAGTCAGCAGGTTGAATCCATGGCCAAAAATGAGGTCATTGATTTACTGAGTCCTTCCCCACCTAAGAAGTTATATGCTTCCTTCAAGTGTCAAGAGTCTAACAATGGTGAACATATTAAGGTGATAAGTTTGAGTGACTCAGACAGTGACACGTCACCTGAACATAAGAGGAAAGCACAGGAGCTGAGAACGTTCCTAGCAGGAATAAGGAATGACCTCAATTGA 1809 0.4146 MGVKHLWDILESCKKTVPLHHLQNKRVCVDLSCWIVQLQNVGKSIPCAKDKLHLRGLFHRIRALIALNCSLIFVTDGSIPAIKLSTYRQRLNSGKDVAQNETNLHKMASLPRNMGSEFSCMIKEARILGMALGIPCLNGIEEGEAQCALLNSELLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVICYEMEDIERKLGFGRDSLIALALLLGSDYSPGVYGLGPESACQIVRSIGDKCVLQKFASEGIECLKRLKGAKKSGQVFKNYNKENVLDHDMALNHGGTNNSQRDCNFLQVINAYVKPKCHPADSDIVMRVLAQYPFQRSKLQQICAEFFQWPPEKTDEYILPKVAERDLRRFANLRLTSSEVGANLPLNEIPVKCPVSEIIKYRKVQGRESFEVSWNEMDGLGTSIVPSDLLESACPEKISEFEEKKGRLKKQNAQKRRPKKTETAPSSSSMAELDRKLMNLSLDINLGDHANQNASDSSEQVSQDASAMDEAYLNNRELSYTSHDEQIDWDQNESSNTFESQQVESMAKNEVIDLLSPSPPKKLYASFKCQESNNGEHIKVISLSDSDSDTSPEHKRKAQELRTFLAGIRNDLN 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3295 602 CDD PIN_GEN1 2 198 - -
Mibi01g3295 602 SMART xpgineu 130 200 IPR006086 GO:0004518
Mibi01g3295 602 MobiDBLite consensus disorder prediction 430 461 - -
Mibi01g3295 602 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Mibi01g3295 602 Gene3D - 201 272 - -
Mibi01g3295 602 FunFam flap endonuclease GEN-like 2 2 199 - -
Mibi01g3295 602 MobiDBLite consensus disorder prediction 476 496 - -
Mibi01g3295 602 SUPERFAMILY Chromo domain-like 383 436 IPR016197 -
Mibi01g3295 602 SMART HhH_4 202 235 IPR008918 GO:0003677|GO:0003824
Mibi01g3295 602 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 362 IPR036279 -
Mibi01g3295 602 SMART xpgn3 1 97 IPR006085 GO:0004518
Mibi01g3295 602 Gene3D - 2 199 - -
Mibi01g3295 602 MobiDBLite consensus disorder prediction 577 591 - -
Mibi01g3295 602 FunFam Flap endonuclease GEN-like 1 200 258 - -
Mibi01g3295 602 MobiDBLite consensus disorder prediction 572 591 - -
Mibi01g3295 602 SUPERFAMILY PIN domain-like 2 215 IPR029060 -
Mibi01g3295 602 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Mibi01g3295 602 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Mibi01g3295 602 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Mibi01g3295 602 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Mibi01g3295 602 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Mibi01g3295 602 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 537 IPR006084 -
Mibi01g3295 602 CDD H3TH_XPG-like 203 246 - -
Mibi01g3295 602 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3295 Mibi-ChrMibi01 58042991 58049011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3295 1 236 Core DNA Replication Machinery Family AT5G26680 26.744 8.27e-14 72.0