Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3280 ATGGAAGATGGGGTTGTGCTGTTCTGTTTGCAGAAGCAGAAAAGGAAGCATCTTTTTGTGGTTATGGCGTTTCTCTTTCTCCTCTCTCCATTTGCTTCCTCCCTTAGCCCAGAAGGACAAGCATTAACGGAGATTAAAGCTTCCTTCAGCAACATAGCAGATGTTTTGCTTGACTGGGATGACTTGCACAATGATGACTTCTGTTCATGGCGTGGCGTTTACTGTGATAATTTAACCCTTACTGTGCTTACTCTGAATCTGTCAAGTTTGAATCTGGGTGGGGAGATATCACCAGCGATTGGTGATTTGAGAAACTTGCAATCCATTGATCTGCAGGGAAATAAGCTGACTGGTCAGATTCCTGATGAAATTGGGAACTGCGCTGCACTTGTTCATCTGGATTTGTCAGATAATCAGCTATACGGTGACATACCCTTCTCAATGTCAAAGCTAAAGGAACTTGAGTTTTTGAATTTGAAGAACAATCAGTTGAGCGGTCCTATTCCTTCAACCTTAACCCAGATTCCAAACCTGAAGACTCTTGATCTTGCTCGCAATCAGCTCACTGGTGAGATACCTAGACTCCTCTATTGGAATGAAGTCTTGCAATACCTAGGGTTGAGAGGGAACATGTTGACTGGAGTTCTATCCCCAGACATATGTCAATTAACTGGACTGTGTGATGTGAGAGGCAACAACTTGACGGGCACAATACCTGAAACCATTGGAAACTGTACAAGTTTTCAAATTCTGGATGTATCCTACAACCAGATTACTGGGGAGATTCCCTATAATATTGGATTTCTGCAGGTGGCTACTTTGTCACTTCAAGGGAATAGACTAACTGGAAGGATTCCAGAAGTGATTGGTTTGATGCAAGCCCTTGCTATTCTGGATTTGAGTGAGAATGAACTGGTGGGCCCCATCCCTCCTGTACTTGGAAATTTATCTTTCACTGGCAAGCTGTATCTCCATGGAAACAAGCTCACTGGTTCAATACCTCCTGAACTCGGCAATATGTCTAAGCTGAGCTACCTGCAACTGAATGGCAACAAACTAGTTGGAAGAATTCCTGAGGAACTTGGAAAGCTTGAGCATTTGTTTGAACTGAATCTTGCTAACAATTATCTTGAAGGATCTATTCCACACAACATAAGCTCCTGTACTTCCTTGAATAAGTTTAATGTGCATGGTAATCGCTTAAGTGGTTCTGTTCCTTTGAGCTTCCGCAGCCTTGGGAGTCTGACTTACTTAAATCTATCAGAAAACAACTTCAAAGGGAATATACCAATTGAGTTGGGACACATCATAAATCTTGATACACTGGATCTATCTCGCAATAATTTTTCAGGGCAGGTTCCAGCATCTGTTGGTTATCTGGAACATCTTCTGACACTTAACTTGAGCCATAACCATTTTACTGGTCCCTTGCCTGCTGAGTTTGGAAATCTGAGAAGCATCCAGATTATTGATATGTCTTTCAACAATCTATCTGGAATCATCCCTCCTGATTTTGGACTGCTGCAGAACCTTAATTCACTGATTCTAAACAACAATGATTTGCATGGGAAGATTCCTGAGCAGTTAACTAACTGCTTCAGTCTCACCTCTTTGAATGTCTCTTACAATAACTTATCTGGAACAATTCCTCCTATGAAGAACTTCTCACGATTTTCGTTTGATAGCTTCATTGGAAATCCCTTGTTATGTGGTAATTGGCTAGGATCAATATGTGATCCTTACATACCAAAATCCAGGGTAACTTTTTCTAGGGCTGCAATTGTTTGCCTCACCCTTGGGATCCTCACATTGTTGGCCATGTCAATAGTTGCTATGTTCAGATTGAGCCAATCAATGCAATTAATGAAGAGATCCAAAGGAAATGGGCAAGGCATGGGTTCCCCTAAACTTGTCGTTCTTCATATGGATATGGCCATGCACACCTATGATGATATAATGAGGAGTACAGAGAATCTAAGTGAGAAGTATATCATAGGATATGGTGCTTCAAGCACAGTGTACAAGTGTGCTTTGAAGAATTCTCGACCGATTGCGATCAAGCGACTATACAACCAGCATCCAAACAATAAAAGAGAGTTTGAAGCAGAACTTGAAACCATCGGCAGCATCAGACATAGAAATCTTGTCACCTTGTATGGTTATGCGCTGACTCCCGATGGAAACCTCCTTTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTTCATGGTCTCTCAAAGAAGGTAAAACTTGACTGGGAAACACGATTAAGGATTGCTGTGGGAGCTGCTGAGGGACTTGCTTATCTCCACCATGGCTGCAACCCTAGAATCATTCACAGGGATATCAAGTCTTCAAATATTCTACTGGATGAGAACTTTGAGGCTCATCTCTCTGATTTCGGCATTGCCAAATGTATCTCAACCACAATAACCCATGCATCAACCCATGTTCTAGGAACAATAGGCTATATTGACCCTGAGTATGCCAGGACATCTCGCCTAAATGAAAAATCTGATGTATACAGCTTTGGCATAGTTCTACTCGAGCTCCTCACCGGGAAGAAAGCAGTGCACAATGAGTCTAACTTGCATCATTTGATACTGTCCAAGACTGATGACAACACTGTAATGGAGGCTGTGGATCCTGAAGTTTCTGTTACCTGCATAAATCAAGCACATGTAAGGAAGACATTTCAGCTTGCACTACTTTGCACAAAAAGAAATCCTTCAGAGAGGCCTACCATGCATGAGGTTGCCAAGGTTTTGGTCTCACTTCTCCCTGCACCTCCCAGCAAGACATATGCCTCGGCTGCTAAGACCATCGACTATGCGCAATTTGTGATCGAAAAGGGGCAACAAGGCGGCCCGAAGAAGGAACTGCCGCAACCTCAACAACCGAACAATTCTTGTGATGCACAATGGTTCATTCGTTTTGGTGATACTATATCCAAGAACACCCTCTAA 2973 0.4248 MEDGVVLFCLQKQKRKHLFVVMAFLFLLSPFASSLSPEGQALTEIKASFSNIADVLLDWDDLHNDDFCSWRGVYCDNLTLTVLTLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLTGQIPDEIGNCAALVHLDLSDNQLYGDIPFSMSKLKELEFLNLKNNQLSGPIPSTLTQIPNLKTLDLARNQLTGEIPRLLYWNEVLQYLGLRGNMLTGVLSPDICQLTGLCDVRGNNLTGTIPETIGNCTSFQILDVSYNQITGEIPYNIGFLQVATLSLQGNRLTGRIPEVIGLMQALAILDLSENELVGPIPPVLGNLSFTGKLYLHGNKLTGSIPPELGNMSKLSYLQLNGNKLVGRIPEELGKLEHLFELNLANNYLEGSIPHNISSCTSLNKFNVHGNRLSGSVPLSFRSLGSLTYLNLSENNFKGNIPIELGHIINLDTLDLSRNNFSGQVPASVGYLEHLLTLNLSHNHFTGPLPAEFGNLRSIQIIDMSFNNLSGIIPPDFGLLQNLNSLILNNNDLHGKIPEQLTNCFSLTSLNVSYNNLSGTIPPMKNFSRFSFDSFIGNPLLCGNWLGSICDPYIPKSRVTFSRAAIVCLTLGILTLLAMSIVAMFRLSQSMQLMKRSKGNGQGMGSPKLVVLHMDMAMHTYDDIMRSTENLSEKYIIGYGASSTVYKCALKNSRPIAIKRLYNQHPNNKREFEAELETIGSIRHRNLVTLYGYALTPDGNLLFYDYMENGSLWDLLHGLSKKVKLDWETRLRIAVGAAEGLAYLHHGCNPRIIHRDIKSSNILLDENFEAHLSDFGIAKCISTTITHASTHVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVHNESNLHHLILSKTDDNTVMEAVDPEVSVTCINQAHVRKTFQLALLCTKRNPSERPTMHEVAKVLVSLLPAPPSKTYASAAKTIDYAQFVIEKGQQGGPKKELPQPQQPNNSCDAQWFIRFGDTISKNTL 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3280 990 Gene3D Phosphorylase Kinase; domain 1 623 734 - -
Mibi01g3280 990 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Mibi01g3280 990 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 228 925 - -
Mibi01g3280 990 ProSiteProfiles Protein kinase domain profile. 659 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g3280 990 ProSitePatterns Protein kinases ATP-binding region signature. 665 687 IPR017441 GO:0005524
Mibi01g3280 990 Gene3D Transferase(Phosphotransferase) domain 1 735 943 - -
Mibi01g3280 990 ProSiteProfiles Leucine-rich repeat profile. 177 199 IPR001611 GO:0005515
Mibi01g3280 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Mibi01g3280 990 Gene3D Ribonuclease Inhibitor 35 198 IPR032675 -
Mibi01g3280 990 Pfam Protein kinase domain 662 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g3280 990 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 35 199 - -
Mibi01g3280 990 Gene3D Ribonuclease Inhibitor 199 271 IPR032675 -
Mibi01g3280 990 SUPERFAMILY RNI-like 64 310 - -
Mibi01g3280 990 SUPERFAMILY RNI-like 228 551 - -
Mibi01g3280 990 SMART serkin_6 659 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g3280 990 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 308 581 - -
Mibi01g3280 990 Pfam Leucine Rich repeat 244 261 IPR001611 GO:0005515
Mibi01g3280 990 Pfam Leucine Rich repeat 532 547 IPR001611 GO:0005515
Mibi01g3280 990 Pfam Leucine Rich repeat 176 191 IPR001611 GO:0005515
Mibi01g3280 990 CDD STKc_IRAK 665 925 - -
Mibi01g3280 990 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 735 936 - -
Mibi01g3280 990 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 630 734 - -
Mibi01g3280 990 SMART LRR_typ_2 103 127 IPR003591 -
Mibi01g3280 990 SMART LRR_typ_2 175 199 IPR003591 -
Mibi01g3280 990 SMART LRR_typ_2 364 388 IPR003591 -
Mibi01g3280 990 SMART LRR_typ_2 151 174 IPR003591 -
Mibi01g3280 990 SMART LRR_typ_2 412 436 IPR003591 -
Mibi01g3280 990 SMART LRR_typ_2 460 483 IPR003591 -
Mibi01g3280 990 SMART LRR_typ_2 484 507 IPR003591 -
Mibi01g3280 990 SMART LRR_typ_2 340 363 IPR003591 -
Mibi01g3280 990 SMART LRR_typ_2 508 532 IPR003591 -
Mibi01g3280 990 SMART LRR_typ_2 292 316 IPR003591 -
Mibi01g3280 990 Pfam Leucine rich repeat 438 497 IPR001611 GO:0005515
Mibi01g3280 990 Pfam Leucine rich repeat 104 164 IPR001611 GO:0005515
Mibi01g3280 990 Gene3D Ribonuclease Inhibitor 272 581 IPR032675 -
Mibi01g3280 990 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 200 307 - -
Mibi01g3280 990 SUPERFAMILY Protein kinase-like (PK-like) 637 925 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3280 Mibi-ChrMibi01 57889218 57896598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3280 105 990 Receptor kinase-like Gene Family AT5G07180 75.901 0.0 1337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Mibi01g3280 Pkinase 1.7e-45 CL0016